RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 SEMA3FQ13275 785 aa9.15□□□□□ -0.94
USP4-211ENST00000485450 ANKRD7Q92527 254 aa9.15□□□□□ -0.94
USP4-211ENST00000485450 EFCC1Q9HA90 598 aa9.15□□□□□ -0.94
USP4-211ENST00000485450 UBTFL1P0CB47 393 aaPredicted RBP9.15□□□□□ -0.94
USP4-211ENST00000485450 ZSCAN23Q3MJ62 389 aa9.15□□□□□ -0.94
USP4-211ENST00000485450 LMBR1LQ6UX01 489 aa9.15□□□□□ -0.94
USP4-211ENST00000485450 ANKRD18AQ8IVF6 992 aa9.15□□□□□ -0.94
USP4-211ENST00000485450 TIGD1Q96MW7 591 aa9.15□□□□□ -0.94
USP4-211ENST00000485450 PARP14Q460N5 1801 aa9.15□□□□□ -0.95
USP4-211ENST00000485450 RPS12P25398 132 aaKnown RBP9.15□□□□□ -0.95
USP4-211ENST00000485450 TDRD7Q8NHU6 1098 aaKnown RBP9.15□□□□□ -0.95
USP4-211ENST00000485450 FEZ1Q99689 392 aa9.15□□□□□ -0.95
USP4-211ENST00000485450 KIF3AQ9Y496 699 aa9.15□□□□□ -0.95
USP4-211ENST00000485450 A0A0G2JMZ2 1700 aa9.15□□□□□ -0.95
USP4-211ENST00000485450 DOCK1Q14185 1865 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 YDJCA8MPS7 323 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 IL15P40933 162 aaPredicted RBP9.14□□□□□ -0.95
USP4-211ENST00000485450 BICDL1Q6ZP65 573 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 ZNF771Q7L3S4 317 aaPredicted RBP9.14□□□□□ -0.95
USP4-211ENST00000485450 DCTPP1Q9H773 170 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 LRRFIP2Q9Y608 721 aaKnown RBP9.14□□□□□ -0.95
USP4-211ENST00000485450 PNMA6EA0A0J9YXQ4 647 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 PDE8BO95263 885 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 GABPB1Q06547 395 aaPredicted RBP9.14□□□□□ -0.95
USP4-211ENST00000485450 CHRNDQ07001 517 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 SLC51AQ86UW1 340 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 PDCL2Q8N4E4 241 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 COA1Q9GZY4 146 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 TAOK3Q9H2K8 898 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 SASH1O94885 1247 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 BANK1Q8NDB2 785 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 DPF2Q92785 391 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 BCL2L13Q9BXK5 485 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 PPP1R1BQ9UD71 204 aaPredicted RBP9.14□□□□□ -0.95
USP4-211ENST00000485450 COG6Q9Y2V7 657 aa9.14□□□□□ -0.95
USP4-211ENST00000485450 RAB11FIP3O75154 756 aa9.13□□□□□ -0.95
USP4-211ENST00000485450 BAG4O95429 457 aaKnown RBP9.13□□□□□ -0.95
USP4-211ENST00000485450 IFIT5Q13325 482 aaKnown RBP9.13□□□□□ -0.95
USP4-211ENST00000485450 NBPF20Q3BBV1 942 aa9.13□□□□□ -0.95
USP4-211ENST00000485450 GPC2Q8N158 579 aa9.13□□□□□ -0.95
USP4-211ENST00000485450 RNF217Q8TC41 542 aa9.13□□□□□ -0.95
USP4-211ENST00000485450 AOX1Q06278 1338 aa9.13□□□□□ -0.95
USP4-211ENST00000485450 PCDHB15Q9Y5E8 787 aa9.13□□□□□ -0.95
USP4-211ENST00000485450 MYO3BQ8WXR4 1341 aa9.13□□□□□ -0.95
USP4-211ENST00000485450 PODNQ7Z5L7 613 aa9.13□□□□□ -0.95
USP4-211ENST00000485450 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.13□□□□□ -0.95
USP4-211ENST00000485450 PTPRFP10586 1907 aa9.12□□□□□ -0.95
USP4-211ENST00000485450 PITPNM2Q9BZ72 1349 aa9.12□□□□□ -0.95
USP4-211ENST00000485450 GLTPD2A6NH11 291 aa9.12□□□□□ -0.95
USP4-211ENST00000485450 PANK1Q8TE04 598 aa9.12□□□□□ -0.95
USP4-211ENST00000485450 C9orf78Q9NZ63 289 aaPredicted RBP9.12□□□□□ -0.95
USP4-211ENST00000485450 MAP4K4O95819 1239 aaPredicted RBP9.12□□□□□ -0.95
USP4-211ENST00000485450 HDLBPQ00341 1268 aaKnown RBP9.12□□□□□ -0.95
USP4-211ENST00000485450 AGBL3Q8NEM8 1001 aa9.12□□□□□ -0.95
USP4-211ENST00000485450 ZNF592Q92610 1267 aa9.12□□□□□ -0.95
USP4-211ENST00000485450 EYA3Q99504 573 aa9.12□□□□□ -0.95
USP4-211ENST00000485450 RWDD1Q9H446 243 aaPredicted RBP9.12□□□□□ -0.95
USP4-211ENST00000485450 OGFRQ9NZT2 677 aa9.12□□□□□ -0.95
USP4-211ENST00000485450 CCDC189A1A4V9 331 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 CCDC66A2RUB6 948 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 C21orf2O43822 256 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 PUM3Q15397 648 aaKnown RBP9.11□□□□□ -0.95
USP4-211ENST00000485450 TERF2Q15554 542 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 CAVIN1Q6NZI2 390 aaKnown RBP9.11□□□□□ -0.95
USP4-211ENST00000485450 PIBF1Q8WXW3 757 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 LPIN2Q92539 896 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 SGSM3Q96HU1 749 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 OSBPL3Q9H4L5 887 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 DACT2Q5SW24 774 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 FAM163AQ96GL9 167 aaPredicted RBP9.11□□□□□ -0.95
USP4-211ENST00000485450 ZNRF3Q9ULT6 936 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.11□□□□□ -0.95
USP4-211ENST00000485450 ZNF541Q9H0D2 1346 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 IGHMBP2P38935 993 aaKnown RBP9.11□□□□□ -0.95
USP4-211ENST00000485450 RASSF7Q02833 373 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 STRIP1Q5VSL9 837 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 CEP120Q8N960 986 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 STAP2Q9UGK3 403 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 CEP83Q9Y592 693 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 PASKQ96RG2 1323 aa9.11□□□□□ -0.95
USP4-211ENST00000485450 DHX16O60231 1041 aaKnown RBP9.1□□□□□ -0.95
USP4-211ENST00000485450 FAM84BQ96KN1 310 aaPredicted RBP9.1□□□□□ -0.95
USP4-211ENST00000485450 NCAPGQ9BPX3 1015 aa9.1□□□□□ -0.95
USP4-211ENST00000485450 LMBRD1Q9NUN5 540 aa9.1□□□□□ -0.95
USP4-211ENST00000485450 GGA1Q9UJY5 639 aa9.1□□□□□ -0.95
USP4-211ENST00000485450 SSC5DA1L4H1 1573 aa9.1□□□□□ -0.95
USP4-211ENST00000485450 LRRC24Q50LG9 513 aa9.1□□□□□ -0.95
USP4-211ENST00000485450 DNAJC21Q5F1R6 531 aaKnown RBP9.1□□□□□ -0.95
USP4-211ENST00000485450 LRSAM1Q6UWE0 723 aa9.1□□□□□ -0.95
USP4-211ENST00000485450 GAKO14976 1311 aa9.1□□□□□ -0.95
USP4-211ENST00000485450 SCNN1DP51172 638 aa9.1□□□□□ -0.95
USP4-211ENST00000485450 CCDC57Q2TAC2 916 aa9.1□□□□□ -0.95
USP4-211ENST00000485450 ERC1Q8IUD2 1116 aa9.1□□□□□ -0.95
USP4-211ENST00000485450 PUS3Q9BZE2 481 aaKnown RBP9.1□□□□□ -0.95
USP4-211ENST00000485450 MYH1P12882 1939 aa9.1□□□□□ -0.95
USP4-211ENST00000485450 K7ELQ4 463 aaPredicted RBP9.09□□□□□ -0.95
USP4-211ENST00000485450 NOLC1Q14978 699 aaKnown RBP eCLIP9.09□□□□□ -0.95
USP4-211ENST00000485450 SPTLC3Q9NUV7 552 aa9.09□□□□□ -0.95
USP4-211ENST00000485450 ATRNL1Q5VV63 1379 aa9.09□□□□□ -0.95
USP4-211ENST00000485450 KIF3CO14782 793 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 258.2 ms