RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 CREBZFQ9NS37 354 aa19.52■□□□□ 0.72
UPF3A-208ENST00000484246 SUPT16HQ9Y5B9 1047 aaKnown RBP19.52■□□□□ 0.72
UPF3A-208ENST00000484246 IGSF3O75054 1194 aa19.51■□□□□ 0.71
UPF3A-208ENST00000484246 CCDC158Q5M9N0 1113 aa19.51■□□□□ 0.71
UPF3A-208ENST00000484246 SULF1Q8IWU6 871 aa19.51■□□□□ 0.71
UPF3A-208ENST00000484246 CLASRPQ8N2M8 674 aaKnown RBP19.51■□□□□ 0.71
UPF3A-208ENST00000484246 HMG20BQ9P0W2 317 aa19.51■□□□□ 0.71
UPF3A-208ENST00000484246 TRAF5O00463 557 aa19.5■□□□□ 0.71
UPF3A-208ENST00000484246 MCAMP43121 646 aa19.5■□□□□ 0.71
UPF3A-208ENST00000484246 CRKP46108 304 aa19.5■□□□□ 0.71
UPF3A-208ENST00000484246 HHIPL2Q6UWX4 724 aa19.5■□□□□ 0.71
UPF3A-208ENST00000484246 APOBEC3FQ8IUX4 373 aaKnown RBP19.5■□□□□ 0.71
UPF3A-208ENST00000484246 SPATA5Q8NB90 893 aa19.5■□□□□ 0.71
UPF3A-208ENST00000484246 TEKT1Q969V4 418 aa19.5■□□□□ 0.71
UPF3A-208ENST00000484246 ZDHHC15Q96MV8 337 aa19.5■□□□□ 0.71
UPF3A-208ENST00000484246 TLR7Q9NYK1 1049 aaKnown RBP19.5■□□□□ 0.71
UPF3A-208ENST00000484246 TMEM88BA6NKF7 163 aa19.49■□□□□ 0.71
UPF3A-208ENST00000484246 PRDX5P30044 214 aa19.49■□□□□ 0.71
UPF3A-208ENST00000484246 USP48Q86UV5 1035 aa19.49■□□□□ 0.71
UPF3A-208ENST00000484246 AACSQ86V21 672 aa19.49■□□□□ 0.71
UPF3A-208ENST00000484246 PRMT6Q96LA8 375 aaPredicted RBP19.49■□□□□ 0.71
UPF3A-208ENST00000484246 IL1RAPL2Q9NP60 686 aa19.49■□□□□ 0.71
UPF3A-208ENST00000484246 ADM5C9JUS6 153 aa19.48■□□□□ 0.71
UPF3A-208ENST00000484246 MYO1BO43795 1136 aa19.48■□□□□ 0.71
UPF3A-208ENST00000484246 LDHBP07195 334 aaKnown RBP19.48■□□□□ 0.71
UPF3A-208ENST00000484246 HDAC1Q13547 482 aaPredicted RBP19.48■□□□□ 0.71
UPF3A-208ENST00000484246 SPDYE2Q495Y8 402 aa19.48■□□□□ 0.71
UPF3A-208ENST00000484246 TTC39AQ5SRH9 613 aa19.48■□□□□ 0.71
UPF3A-208ENST00000484246 LRRCC1Q9C099 1032 aa19.48■□□□□ 0.71
UPF3A-208ENST00000484246 CCDC8Q9H0W5 538 aaPredicted RBP19.48■□□□□ 0.71
UPF3A-208ENST00000484246 CST9Q5W186 159 aa19.47■□□□□ 0.71
UPF3A-208ENST00000484246 SPTY2D1Q68D10 685 aaPredicted RBP19.47■□□□□ 0.71
UPF3A-208ENST00000484246 PCDHAC2Q9Y5I4 1007 aa19.47■□□□□ 0.71
UPF3A-208ENST00000484246 PPP2R3BQ9Y5P8 575 aa19.47■□□□□ 0.71
UPF3A-208ENST00000484246 GAKO14976 1311 aa19.47■□□□□ 0.71
UPF3A-208ENST00000484246 APOBEC3HQ6NTF7 200 aaKnown RBP19.46■□□□□ 0.71
UPF3A-208ENST00000484246 PI16Q6UXB8 463 aa19.46■□□□□ 0.71
UPF3A-208ENST00000484246 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.46■□□□□ 0.71
UPF3A-208ENST00000484246 FAM163AQ96GL9 167 aaPredicted RBP19.46■□□□□ 0.71
UPF3A-208ENST00000484246 AOX1Q06278 1338 aa19.46■□□□□ 0.71
UPF3A-208ENST00000484246 FMR1Q06787 632 aaKnown RBP eCLIP19.45■□□□□ 0.7
UPF3A-208ENST00000484246 CDCA5Q96FF9 252 aa19.45■□□□□ 0.7
UPF3A-208ENST00000484246 DAGLAQ9Y4D2 1042 aa19.45■□□□□ 0.7
UPF3A-208ENST00000484246 MYH13Q9UKX3 1938 aa19.45■□□□□ 0.7
UPF3A-208ENST00000484246 CELF2O95319 508 aaKnown RBP19.44■□□□□ 0.7
UPF3A-208ENST00000484246 IFIT2P09913 472 aaKnown RBP19.44■□□□□ 0.7
UPF3A-208ENST00000484246 RBM5P52756 815 aaKnown RBP eCLIP19.44■□□□□ 0.7
UPF3A-208ENST00000484246 FKBP1CQ5VVH2 108 aa19.44■□□□□ 0.7
UPF3A-208ENST00000484246 DNAJC5GQ8N7S2 189 aa19.44■□□□□ 0.7
UPF3A-208ENST00000484246 EXOC6Q8TAG9 804 aa19.44■□□□□ 0.7
UPF3A-208ENST00000484246 RASSF10A6NK89 507 aa19.43■□□□□ 0.7
UPF3A-208ENST00000484246 APBB1O00213 710 aa19.43■□□□□ 0.7
UPF3A-208ENST00000484246 TNFAIP1Q13829 316 aa19.43■□□□□ 0.7
UPF3A-208ENST00000484246 ERICH6Q7L0X2 663 aa19.43■□□□□ 0.7
UPF3A-208ENST00000484246 DZIP1Q86YF9 867 aaKnown RBP19.43■□□□□ 0.7
UPF3A-208ENST00000484246 SLF2Q8IX21 1173 aa19.43■□□□□ 0.7
UPF3A-208ENST00000484246 HHIPL1Q96JK4 782 aa19.43■□□□□ 0.7
UPF3A-208ENST00000484246 ZNF70Q9UC06 446 aaPredicted RBP19.43■□□□□ 0.7
UPF3A-208ENST00000484246 ABCF2Q9UG63 623 aa19.43■□□□□ 0.7
UPF3A-208ENST00000484246 TLL2Q9Y6L7 1015 aa19.43■□□□□ 0.7
UPF3A-208ENST00000484246 CNTNAP1P78357 1384 aa19.43■□□□□ 0.7
UPF3A-208ENST00000484246 CLRN2A0PK11 232 aa19.42■□□□□ 0.7
UPF3A-208ENST00000484246 CYP2E1P05181 493 aaPredicted RBP19.42■□□□□ 0.7
UPF3A-208ENST00000484246 FKBP1BP68106 108 aa19.42■□□□□ 0.7
UPF3A-208ENST00000484246 HTRA3P83110 453 aa19.42■□□□□ 0.7
UPF3A-208ENST00000484246 DIXDC1Q155Q3 683 aa19.42■□□□□ 0.7
UPF3A-208ENST00000484246 TMED8Q6PL24 325 aaPredicted RBP19.42■□□□□ 0.7
UPF3A-208ENST00000484246 ZNF384Q8TF68 577 aa19.42■□□□□ 0.7
UPF3A-208ENST00000484246 GCC1Q96CN9 775 aa19.42■□□□□ 0.7
UPF3A-208ENST00000484246 DEFB129Q9H1M3 183 aa19.42■□□□□ 0.7
UPF3A-208ENST00000484246 TDRD3Q9H7E2 651 aaKnown RBP19.42■□□□□ 0.7
UPF3A-208ENST00000484246 CAPN15O75808 1086 aa19.41■□□□□ 0.7
UPF3A-208ENST00000484246 ZAP70P43403 619 aa19.41■□□□□ 0.7
UPF3A-208ENST00000484246 MECOMQ03112 1051 aa19.41■□□□□ 0.7
UPF3A-208ENST00000484246 DLK2Q6UY11 383 aa19.41■□□□□ 0.7
UPF3A-208ENST00000484246 NSUN4Q96CB9 384 aaKnown RBP19.41■□□□□ 0.7
UPF3A-208ENST00000484246 MROH7-TTC4A0A0A0MT08 1334 aa19.41■□□□□ 0.7
UPF3A-208ENST00000484246 RFX7Q2KHR2 1363 aa19.41■□□□□ 0.7
UPF3A-208ENST00000484246 RPAP1Q9BWH6 1393 aaPredicted RBP19.41■□□□□ 0.7
UPF3A-208ENST00000484246 ECM29Q5VYK3 1845 aa19.4■□□□□ 0.7
UPF3A-208ENST00000484246 ATP5JP18859 108 aa19.4■□□□□ 0.7
UPF3A-208ENST00000484246 GSTO1P78417 241 aa19.4■□□□□ 0.7
UPF3A-208ENST00000484246 TBC1D9Q6ZT07 1266 aa19.4■□□□□ 0.7
UPF3A-208ENST00000484246 SAPCD2Q86UD0 394 aa19.4■□□□□ 0.7
UPF3A-208ENST00000484246 FAM83AQ86UY5 434 aa19.4■□□□□ 0.7
UPF3A-208ENST00000484246 KLRG1Q96E93 195 aa19.4■□□□□ 0.7
UPF3A-208ENST00000484246 VEZTQ9HBM0 779 aa19.4■□□□□ 0.7
UPF3A-208ENST00000484246 GBA2Q9HCG7 927 aaPredicted RBP19.4■□□□□ 0.7
UPF3A-208ENST00000484246 SNRKQ9NRH2 765 aa19.4■□□□□ 0.7
UPF3A-208ENST00000484246 PAPPA2Q9BXP8 1791 aa19.39■□□□□ 0.7
UPF3A-208ENST00000484246 MAP4K4O95819 1239 aaPredicted RBP19.39■□□□□ 0.69
UPF3A-208ENST00000484246 SMC5Q8IY18 1101 aa19.39■□□□□ 0.69
UPF3A-208ENST00000484246 TMOD2Q9NZR1 351 aa19.39■□□□□ 0.69
UPF3A-208ENST00000484246 MAST2Q6P0Q8 1798 aa19.39■□□□□ 0.69
UPF3A-208ENST00000484246 TRPM7Q96QT4 1865 aa19.39■□□□□ 0.69
UPF3A-208ENST00000484246 AKAP11Q9UKA4 1901 aa19.39■□□□□ 0.69
UPF3A-208ENST00000484246 GPR75-ASB3A0A0A6YYF3 556 aa19.38■□□□□ 0.69
UPF3A-208ENST00000484246 SSC5DA1L4H1 1573 aa19.38■□□□□ 0.69
UPF3A-208ENST00000484246 SMARCA5O60264 1052 aaPredicted RBP19.38■□□□□ 0.69
UPF3A-208ENST00000484246 MYCNP04198 464 aaPredicted RBP19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms