RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 POLD1P28340 1107 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 CCZ1BP86790 482 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 CCZ1P86791 482 aaPredicted RBP10.01□□□□□ -0.81
HPS4-206ENST00000439453 RNF20Q5VTR2 975 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 CCAR2Q8N163 923 aaKnown RBP10.01□□□□□ -0.81
HPS4-206ENST00000439453 SPEF2Q9C093 1822 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 RIC1Q4ADV7 1423 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 CREB3L3Q68CJ9 461 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 GIGYF2Q6Y7W6 1299 aaKnown RBP10□□□□□ -0.81
HPS4-206ENST00000439453 C11orf57Q6ZUT1 292 aaPredicted RBP10□□□□□ -0.81
HPS4-206ENST00000439453 NOL10Q9BSC4 688 aaKnown RBP10□□□□□ -0.81
HPS4-206ENST00000439453 ZBTB3Q9H5J0 574 aa10□□□□□ -0.81
HPS4-206ENST00000439453 RBM8AQ9Y5S9 174 aaKnown RBP10□□□□□ -0.81
HPS4-206ENST00000439453 BMS1Q14692 1282 aaKnown RBP10□□□□□ -0.81
HPS4-206ENST00000439453 CD2APQ9Y5K6 639 aa10□□□□□ -0.81
HPS4-206ENST00000439453 NPHP1O15259 732 aa10□□□□□ -0.81
HPS4-206ENST00000439453 PSMA5P28066 241 aa10□□□□□ -0.81
HPS4-206ENST00000439453 PRR5LQ6MZQ0 368 aa10□□□□□ -0.81
HPS4-206ENST00000439453 FILIP1Q7Z7B0 1213 aa10□□□□□ -0.81
HPS4-206ENST00000439453 LTBP1Q14766 1721 aa9.99□□□□□ -0.81
HPS4-206ENST00000439453 KIF2AO00139 706 aaPredicted RBP9.99□□□□□ -0.81
HPS4-206ENST00000439453 TULP2O00295 520 aa9.99□□□□□ -0.81
HPS4-206ENST00000439453 SERPINB2P05120 415 aa9.99□□□□□ -0.81
HPS4-206ENST00000439453 HSP90AB4PQ58FF6 505 aa9.99□□□□□ -0.81
HPS4-206ENST00000439453 KCND1Q9NSA2 647 aa9.99□□□□□ -0.81
HPS4-206ENST00000439453 COL9A3Q14050 684 aaPredicted RBP9.99□□□□□ -0.81
HPS4-206ENST00000439453 IPO4Q8TEX9 1081 aaKnown RBP9.99□□□□□ -0.81
HPS4-206ENST00000439453 DNAJC2Q99543 621 aaKnown RBP9.99□□□□□ -0.81
HPS4-206ENST00000439453 NTSR2O95665 410 aa9.99□□□□□ -0.81
HPS4-206ENST00000439453 H2AFXP16104 143 aaPredicted RBP9.99□□□□□ -0.81
HPS4-206ENST00000439453 CYP2C19P33261 490 aa9.99□□□□□ -0.81
HPS4-206ENST00000439453 SLC20A2Q08357 652 aa9.99□□□□□ -0.81
HPS4-206ENST00000439453 ANKRD1Q15327 319 aa9.99□□□□□ -0.81
HPS4-206ENST00000439453 STX1AQ16623 288 aa9.99□□□□□ -0.81
HPS4-206ENST00000439453 SLC27A2O14975 620 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 OS9Q13438 667 aaPredicted RBP9.98□□□□□ -0.81
HPS4-206ENST00000439453 TCEANC2Q96MN5 208 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 DICER1Q9UPY3 1922 aaKnown RBP9.98□□□□□ -0.81
HPS4-206ENST00000439453 BECN2A8MW95 431 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 BLOC1S2Q6QNY1 142 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 BICDL1Q6ZP65 573 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 PLBD2Q8NHP8 589 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 MAP4K1Q92918 833 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 ISCA1Q9BUE6 129 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 PPP1R1BQ9UD71 204 aaPredicted RBP9.98□□□□□ -0.81
HPS4-206ENST00000439453 PARP3Q9Y6F1 533 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 CAPN2P17655 700 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 AIMP1Q12904 312 aaKnown RBP9.98□□□□□ -0.81
HPS4-206ENST00000439453 ERCC6LQ2NKX8 1250 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 SUSD4Q5VX71 490 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 L2HGDHQ9H9P8 463 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 ECHDC1Q9NTX5 307 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 FHOD1Q9Y613 1164 aa9.98□□□□□ -0.81
HPS4-206ENST00000439453 NBPF7P0C2Y1 421 aaPredicted RBP9.97□□□□□ -0.81
HPS4-206ENST00000439453 YBX3P16989 372 aaKnown RBP eCLIP9.97□□□□□ -0.81
HPS4-206ENST00000439453 RESTQ13127 1097 aa9.97□□□□□ -0.81
HPS4-206ENST00000439453 CCDC24Q8N4L8 307 aa9.97□□□□□ -0.81
HPS4-206ENST00000439453 GTF3C6Q969F1 213 aa9.97□□□□□ -0.81
HPS4-206ENST00000439453 EVI5LQ96CN4 794 aa9.97□□□□□ -0.81
HPS4-206ENST00000439453 SNED1Q8TER0 1413 aa9.97□□□□□ -0.81
HPS4-206ENST00000439453 KLRG2A4D1S0 409 aaPredicted RBP9.97□□□□□ -0.81
HPS4-206ENST00000439453 CTAGE5O15320 804 aa9.97□□□□□ -0.81
HPS4-206ENST00000439453 RPS6KB1P23443 525 aa9.97□□□□□ -0.81
HPS4-206ENST00000439453 STK3Q13188 491 aa9.97□□□□□ -0.81
HPS4-206ENST00000439453 SNW1Q13573 536 aaKnown RBP9.97□□□□□ -0.81
HPS4-206ENST00000439453 KIF6Q6ZMV9 814 aa9.97□□□□□ -0.81
HPS4-206ENST00000439453 CLASRPQ8N2M8 674 aaKnown RBP9.97□□□□□ -0.81
HPS4-206ENST00000439453 CLCN6P51797 869 aa9.97□□□□□ -0.81
HPS4-206ENST00000439453 HNRNPH2P55795 449 aaKnown RBP9.97□□□□□ -0.81
HPS4-206ENST00000439453 GSDMDP57764 484 aa9.97□□□□□ -0.81
HPS4-206ENST00000439453 TOB2Q14106 344 aaPredicted RBP9.97□□□□□ -0.81
HPS4-206ENST00000439453 DHX40Q8IX18 779 aaKnown RBP9.97□□□□□ -0.81
HPS4-206ENST00000439453 ALDH8A1Q9H2A2 487 aaPredicted RBP9.97□□□□□ -0.81
HPS4-206ENST00000439453 NIP7Q9Y221 180 aaKnown RBP eCLIP9.97□□□□□ -0.81
HPS4-206ENST00000439453 TCIRG1Q13488 830 aa9.96□□□□□ -0.81
HPS4-206ENST00000439453 C3orf67Q6ZVT6 689 aa9.96□□□□□ -0.81
HPS4-206ENST00000439453 NLRP10Q86W26 655 aa9.96□□□□□ -0.81
HPS4-206ENST00000439453 GPATCH3Q96I76 525 aa9.96□□□□□ -0.81
HPS4-206ENST00000439453 FAM227BQ96M60 508 aa9.96□□□□□ -0.81
HPS4-206ENST00000439453 IGKV5-2P06315 115 aa9.96□□□□□ -0.82
HPS4-206ENST00000439453 NMIQ13287 307 aaPredicted RBP9.96□□□□□ -0.82
HPS4-206ENST00000439453 ANKRD13DQ6ZTN6 518 aa9.96□□□□□ -0.82
HPS4-206ENST00000439453 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.96□□□□□ -0.82
HPS4-206ENST00000439453 TIAM2Q8IVF5 1701 aa9.96□□□□□ -0.82
HPS4-206ENST00000439453 PNMA6AP0CW24 399 aaPredicted RBP9.96□□□□□ -0.82
HPS4-206ENST00000439453 GPTP24298 496 aa9.96□□□□□ -0.82
HPS4-206ENST00000439453 SYNE4Q8N205 404 aa9.96□□□□□ -0.82
HPS4-206ENST00000439453 LRRN4CLQ8ND94 238 aa9.96□□□□□ -0.82
HPS4-206ENST00000439453 SETDB2Q96T68 719 aa9.96□□□□□ -0.82
HPS4-206ENST00000439453 CFAP45Q9UL16 551 aa9.96□□□□□ -0.82
HPS4-206ENST00000439453 ZNF652Q9Y2D9 606 aa9.96□□□□□ -0.82
HPS4-206ENST00000439453 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.95□□□□□ -0.82
HPS4-206ENST00000439453 JAK2O60674 1132 aa9.95□□□□□ -0.82
HPS4-206ENST00000439453 IFIT2P09913 472 aaKnown RBP9.95□□□□□ -0.82
HPS4-206ENST00000439453 DPEP1P16444 411 aa9.95□□□□□ -0.82
HPS4-206ENST00000439453 CHRNA5P30532 468 aa9.95□□□□□ -0.82
HPS4-206ENST00000439453 PLA2G4AP47712 749 aa9.95□□□□□ -0.82
HPS4-206ENST00000439453 CCDC93Q567U6 631 aa9.95□□□□□ -0.82
HPS4-206ENST00000439453 CCAR1Q8IX12 1150 aaKnown RBP9.95□□□□□ -0.82
HPS4-206ENST00000439453 BRF1Q92994 677 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms