RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 NAP1L2Q9ULW6 460 aaPredicted RBP11.52□□□□□ -0.57
SS18-203ENST00000415083 WDR17Q8IZU2 1322 aa11.52□□□□□ -0.57
SS18-203ENST00000415083 SKILP12757 684 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 PTPAQ15257 358 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 FILIP1Q7Z7B0 1213 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 FOXP4Q8IVH2 680 aaPredicted RBP11.51□□□□□ -0.57
SS18-203ENST00000415083 CCAR2Q8N163 923 aaKnown RBP11.51□□□□□ -0.57
SS18-203ENST00000415083 ZCRB1Q8TBF4 217 aaKnown RBP11.51□□□□□ -0.57
SS18-203ENST00000415083 MAP3K14Q99558 947 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 POLR3EQ9NVU0 708 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 TRMT1Q9NXH9 659 aaKnown RBP11.51□□□□□ -0.57
SS18-203ENST00000415083 LRP5O75197 1615 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 BCORQ6W2J9 1755 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 CTAGE5O15320 804 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 RANBP6O60518 1105 aaKnown RBP11.51□□□□□ -0.57
SS18-203ENST00000415083 TRHP20396 242 aaPredicted RBP11.51□□□□□ -0.57
SS18-203ENST00000415083 TCIRG1Q13488 830 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 XPO4Q9C0E2 1151 aaKnown RBP11.51□□□□□ -0.57
SS18-203ENST00000415083 OSBPL5Q9H0X9 879 aaPredicted RBP11.51□□□□□ -0.57
SS18-203ENST00000415083 ATRNO75882 1429 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 TCRBV5S4A2TA0A5A2 114 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 ERVV-2B6SEH9 535 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 BIN1O00499 593 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 GPAA1O43292 621 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 ATP1A3P13637 1013 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 BMP6P22004 513 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 NTRK3Q16288 839 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 CEP135Q66GS9 1140 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 ATL3Q6DD88 541 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 SHC4Q6S5L8 630 aa11.51□□□□□ -0.57
SS18-203ENST00000415083 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.51□□□□□ -0.57
SS18-203ENST00000415083 V9GYY5 206 aaPredicted RBP11.51□□□□□ -0.57
SS18-203ENST00000415083 CAVIN2O95810 425 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 PFKFB1P16118 471 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 TPD52L1Q16890 204 aaPredicted RBP11.5□□□□□ -0.57
SS18-203ENST00000415083 ISM2Q6H9L7 571 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 TICAM2Q86XR7 235 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 ZNF215Q9UL58 517 aaPredicted RBP11.5□□□□□ -0.57
SS18-203ENST00000415083 HPSEQ9Y251 543 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 PCDH11XQ9BZA7 1347 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 PCDH11YQ9BZA8 1340 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 GOLGA8BA8MQT2 603 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 SHISA4Q96DD7 197 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 ZNF396Q96N95 335 aaPredicted RBP11.5□□□□□ -0.57
SS18-203ENST00000415083 GREM2Q9H772 168 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 ANO10Q9NW15 660 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 FAM53CQ9NYF3 392 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 ASAP1Q9ULH1 1129 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 KINO60870 393 aaKnown RBP11.5□□□□□ -0.57
SS18-203ENST00000415083 ZNF202O95125 648 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 SYCP1Q15431 976 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 KMT5BQ4FZB7 885 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 CCDC73Q6ZRK6 1079 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 APPBP2Q92624 585 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 BPIFA3Q9BQP9 254 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 PLA2G12BQ9BX93 195 aa11.5□□□□□ -0.57
SS18-203ENST00000415083 ORC3Q9UBD5 711 aaPredicted RBP11.5□□□□□ -0.57
SS18-203ENST00000415083 SPTLC2O15270 562 aa11.49□□□□□ -0.57
SS18-203ENST00000415083 MARCKSP29966 332 aaPredicted RBP11.49□□□□□ -0.57
SS18-203ENST00000415083 INTS13Q9NVM9 706 aa11.49□□□□□ -0.57
SS18-203ENST00000415083 ZNF446Q9NWS9 450 aa11.49□□□□□ -0.57
SS18-203ENST00000415083 SNAP23O00161 211 aa11.49□□□□□ -0.57
SS18-203ENST00000415083 FOXN1O15353 648 aa11.49□□□□□ -0.57
SS18-203ENST00000415083 ADD2P35612 726 aa11.49□□□□□ -0.57
SS18-203ENST00000415083 GOLGA8FQ08AF8 430 aa11.49□□□□□ -0.57
SS18-203ENST00000415083 GOLGA8DPQ0D2H9 430 aa11.49□□□□□ -0.57
SS18-203ENST00000415083 BRINP3Q76B58 766 aa11.49□□□□□ -0.57
SS18-203ENST00000415083 PHKBQ93100 1093 aa11.49□□□□□ -0.57
SS18-203ENST00000415083 C8orf76Q96K31 380 aa11.49□□□□□ -0.57
SS18-203ENST00000415083 IFNKQ9P0W0 207 aa11.49□□□□□ -0.57
SS18-203ENST00000415083 TIAM2Q8IVF5 1701 aa11.49□□□□□ -0.57
SS18-203ENST00000415083 GOLGA6L19H0YKK7 550 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 YEATS4O95619 227 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 ATF3P18847 181 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 GRIN1Q05586 938 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 WASHC4Q2M389 1173 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 TTC39AQ5SRH9 613 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 DNAJC10Q8IXB1 793 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 TTLL11Q8NHH1 800 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 IGDCC4Q8TDY8 1250 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 CLIC6Q96NY7 704 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 EPB41L4AQ9HCS5 686 aaPredicted RBP11.48□□□□□ -0.57
SS18-203ENST00000415083 CEP126Q9P2H0 1117 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 WWC3Q9ULE0 1092 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 SH2B2O14492 632 aaPredicted RBP11.48□□□□□ -0.57
SS18-203ENST00000415083 PDE4BQ07343 736 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 TRIM28Q13263 835 aaKnown RBP11.48□□□□□ -0.57
SS18-203ENST00000415083 CCDC93Q567U6 631 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 ANO1Q5XXA6 986 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 MED15Q96RN5 788 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 SEC31BQ9NQW1 1179 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 SMIM22K7EJ46 135 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 PCCAP05165 728 aaPredicted RBP11.48□□□□□ -0.57
SS18-203ENST00000415083 GUCY1A2P33402 732 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 MYL10Q9BUA6 226 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 TUBE1Q9UJT0 475 aa11.48□□□□□ -0.57
SS18-203ENST00000415083 SF3A1Q15459 793 aaKnown RBP11.47□□□□□ -0.57
SS18-203ENST00000415083 UTP14CQ5TAP6 766 aaKnown RBP11.47□□□□□ -0.57
SS18-203ENST00000415083 METTL16Q86W50 562 aaKnown RBP11.47□□□□□ -0.57
SS18-203ENST00000415083 PIGBQ92521 554 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms