RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 SPATA31A5Q5VU36 1347 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 SPATA31A7Q8IWB4 1347 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 GNAT2P19087 354 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 USP48Q86UV5 1035 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 IQCA1Q86XH1 822 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 CNPY4Q8N129 248 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 MAGEB6Q8N7X4 407 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 WASF1Q92558 559 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 RUFY1Q96T51 708 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 PUS3Q9BZE2 481 aaKnown RBP6.55□□□□□ -1.36
RFFL-202ENST00000394597 CRNKL1Q9BZJ0 848 aaKnown RBP6.55□□□□□ -1.36
RFFL-202ENST00000394597 SHPRHQ149N8 1683 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 LOC102724159A0A0B4J2E5 919 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 CCDC196A0A1B0GTZ2 297 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 RANBP6O60518 1105 aaKnown RBP6.54□□□□□ -1.36
RFFL-202ENST00000394597 SASH1O94885 1247 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 CASQ1P31415 396 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 KCNQ4P56696 695 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 TRIM28Q13263 835 aaKnown RBP6.54□□□□□ -1.36
RFFL-202ENST00000394597 PWP2Q15269 919 aaKnown RBP6.54□□□□□ -1.36
RFFL-202ENST00000394597 EPHA10Q5JZY3 1008 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 CLEC4GQ6UXB4 293 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 CCDC24Q8N4L8 307 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 MARCH10Q8NA82 808 aaPredicted RBP6.54□□□□□ -1.36
RFFL-202ENST00000394597 HAUS7Q99871 368 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 ARFGAP3Q9NP61 516 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 STK32BQ9NY57 414 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 CFAP45Q9UL16 551 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 XRN1Q8IZH2 1706 aaKnown RBP6.54□□□□□ -1.36
RFFL-202ENST00000394597 MEGF6O75095 1541 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 KCNQ2O43526 872 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 TRIM37O94972 964 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 SKILP12757 684 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 RXRBP28702 533 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 HIBADHP31937 336 aaKnown RBP6.54□□□□□ -1.36
RFFL-202ENST00000394597 UBE2HP62256 183 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 PDIA6Q15084 440 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 VPS53Q5VIR6 699 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 CCDC70Q6NSX1 233 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 ZNF444Q8N0Y2 327 aaPredicted RBP6.54□□□□□ -1.36
RFFL-202ENST00000394597 PDILTQ8N807 584 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 FLAD1Q8NFF5 587 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 APPBP2Q92624 585 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 PDLIM2Q96JY6 352 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 ISCA1Q9BUE6 129 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 ZC3H12CQ9C0D7 883 aaKnown RBP6.54□□□□□ -1.36
RFFL-202ENST00000394597 ATP10DQ9P241 1426 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 RPS6KA4O75676 772 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 PDE8BO95263 885 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 SFPQP23246 707 aaKnown RBP eCLIP6.54□□□□□ -1.36
RFFL-202ENST00000394597 GJB2P29033 226 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 HSPA1LP34931 641 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 MAP2K2P36507 400 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 ZAP70P43403 619 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 CCT2P78371 535 aaKnown RBP6.54□□□□□ -1.36
RFFL-202ENST00000394597 STK38Q15208 465 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 RUFY3Q7L099 469 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 ZSCAN29Q8IWY8 852 aaPredicted RBP6.54□□□□□ -1.36
RFFL-202ENST00000394597 BRF1Q92994 677 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 HOOK1Q9UJC3 728 aaKnown RBP6.54□□□□□ -1.36
RFFL-202ENST00000394597 SLC12A7Q9Y666 1083 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 NDUFB9Q9Y6M9 179 aa6.54□□□□□ -1.36
RFFL-202ENST00000394597 MAGEB6P1A0A0J9YX57 407 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 KINO60870 393 aaKnown RBP6.53□□□□□ -1.36
RFFL-202ENST00000394597 HSPA4P34932 840 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 AK2P54819 239 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 SUSD4Q5VX71 490 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 CCDC129Q6ZRS4 1044 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 CLEC17AQ6ZS10 378 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 Q6ZUG5 572 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 EDC3Q96F86 508 aaKnown RBP6.53□□□□□ -1.36
RFFL-202ENST00000394597 KRT23Q9C075 422 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 DBNLQ9UJU6 430 aaKnown RBP6.53□□□□□ -1.36
RFFL-202ENST00000394597 CTDP1Q9Y5B0 961 aaPredicted RBP6.53□□□□□ -1.36
RFFL-202ENST00000394597 SNX14Q9Y5W7 946 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 CHD2O14647 1828 aaKnown RBP6.53□□□□□ -1.36
RFFL-202ENST00000394597 AKAP12Q02952 1782 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 SLC27A2O14975 620 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 SSR1P43307 286 aaKnown RBP6.53□□□□□ -1.36
RFFL-202ENST00000394597 ZNF165P49910 485 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 CEBPZQ03701 1054 aaKnown RBP6.53□□□□□ -1.36
RFFL-202ENST00000394597 TMEM67Q5HYA8 995 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 ICE2Q659A1 982 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 TTLL11Q8NHH1 800 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 FAM200AQ8TCP9 573 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 TCEANC2Q96MN5 208 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 CNNM2Q9H8M5 875 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 GOLGA8BA8MQT2 603 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 STX6O43752 255 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 ATP2B2Q01814 1243 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 PDE4BQ07343 736 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 DHX32Q7L7V1 743 aaKnown RBP6.53□□□□□ -1.36
RFFL-202ENST00000394597 SPATA5Q8NB90 893 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 PPM1EQ8WY54 764 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 TMOD2Q9NZR1 351 aa6.53□□□□□ -1.36
RFFL-202ENST00000394597 DDX41Q9UJV9 622 aaKnown RBP6.53□□□□□ -1.36
RFFL-202ENST00000394597 VIRMAQ69YN4 1812 aaKnown RBP6.53□□□□□ -1.36
RFFL-202ENST00000394597 ATP2B1P20020 1258 aa6.52□□□□□ -1.36
RFFL-202ENST00000394597 SARNPP82979 210 aaKnown RBP6.52□□□□□ -1.36
RFFL-202ENST00000394597 MCM6Q14566 821 aa6.52□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms