RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 LTBP1Q14766 1721 aa21.61■■□□□ 1.05
CCDC88C-203ENST00000389856 SLFNL1Q499Z3 407 aa21.61■■□□□ 1.05
CCDC88C-203ENST00000389856 NEK1Q96PY6 1258 aa21.61■■□□□ 1.05
CCDC88C-203ENST00000389856 WTIPA6NIX2 430 aaPredicted RBP21.6■■□□□ 1.05
CCDC88C-203ENST00000389856 CYP7A1P22680 504 aa21.6■■□□□ 1.05
CCDC88C-203ENST00000389856 CHAF1AQ13111 956 aaPredicted RBP21.6■■□□□ 1.05
CCDC88C-203ENST00000389856 CC2D2BQ6DHV5 1058 aa21.6■■□□□ 1.05
CCDC88C-203ENST00000389856 NAA16Q6N069 864 aaPredicted RBP21.6■■□□□ 1.05
CCDC88C-203ENST00000389856 DPP8Q6V1X1 898 aaPredicted RBP21.6■■□□□ 1.05
CCDC88C-203ENST00000389856 ZSCAN31Q96LW9 406 aaPredicted RBP21.6■■□□□ 1.05
CCDC88C-203ENST00000389856 ALDH8A1Q9H2A2 487 aaPredicted RBP21.6■■□□□ 1.05
CCDC88C-203ENST00000389856 APPP05067 770 aa21.59■■□□□ 1.05
CCDC88C-203ENST00000389856 CYP21A2P08686 494 aa21.59■■□□□ 1.05
CCDC88C-203ENST00000389856 ALX1Q15699 326 aa21.59■■□□□ 1.05
CCDC88C-203ENST00000389856 GRIPAP1Q4V328 841 aa21.59■■□□□ 1.05
CCDC88C-203ENST00000389856 TTC14Q96N46 770 aa21.59■■□□□ 1.05
CCDC88C-203ENST00000389856 STRBPQ96SI9 672 aaKnown RBP21.59■■□□□ 1.05
CCDC88C-203ENST00000389856 LIMCH1Q9UPQ0 1083 aa21.59■■□□□ 1.05
CCDC88C-203ENST00000389856 C10orf71Q711Q0 1435 aa21.59■■□□□ 1.05
CCDC88C-203ENST00000389856 MBD4O95243 580 aa21.58■■□□□ 1.05
CCDC88C-203ENST00000389856 IL1R1P14778 569 aa21.58■■□□□ 1.05
CCDC88C-203ENST00000389856 RPS6KB1P23443 525 aa21.58■■□□□ 1.05
CCDC88C-203ENST00000389856 GSTO1P78417 241 aa21.58■■□□□ 1.05
CCDC88C-203ENST00000389856 ADCK5Q3MIX3 580 aa21.58■■□□□ 1.05
CCDC88C-203ENST00000389856 TXNRD3Q86VQ6 643 aa21.58■■□□□ 1.05
CCDC88C-203ENST00000389856 TBC1D22AQ8WUA7 517 aa21.58■■□□□ 1.05
CCDC88C-203ENST00000389856 MAGEB6P1A0A0J9YX57 407 aa21.58■■□□□ 1.04
CCDC88C-203ENST00000389856 PATL2C9JE40 543 aaKnown RBP21.58■■□□□ 1.04
CCDC88C-203ENST00000389856 ZNF213O14771 459 aa21.58■■□□□ 1.04
CCDC88C-203ENST00000389856 INTS4Q96HW7 963 aaKnown RBP21.58■■□□□ 1.04
CCDC88C-203ENST00000389856 TMX3Q96JJ7 454 aa21.58■■□□□ 1.04
CCDC88C-203ENST00000389856 ZC3H12CQ9C0D7 883 aaKnown RBP21.58■■□□□ 1.04
CCDC88C-203ENST00000389856 COA1Q9GZY4 146 aa21.58■■□□□ 1.04
CCDC88C-203ENST00000389856 CD209Q9NNX6 404 aa21.58■■□□□ 1.04
CCDC88C-203ENST00000389856 SH2B1Q9NRF2 756 aaPredicted RBP21.58■■□□□ 1.04
CCDC88C-203ENST00000389856 KIAA1551Q9HCM1 1747 aa21.57■■□□□ 1.04
CCDC88C-203ENST00000389856 CACNA1SQ13698 1873 aa21.57■■□□□ 1.04
CCDC88C-203ENST00000389856 FGAP02671 866 aa21.57■■□□□ 1.04
CCDC88C-203ENST00000389856 DZIP1Q86YF9 867 aaKnown RBP21.57■■□□□ 1.04
CCDC88C-203ENST00000389856 CERS3Q8IU89 383 aa21.57■■□□□ 1.04
CCDC88C-203ENST00000389856 UPF1Q92900 1129 aaKnown RBP eCLIP21.57■■□□□ 1.04
CCDC88C-203ENST00000389856 POLLQ9UGP5 575 aa21.57■■□□□ 1.04
CCDC88C-203ENST00000389856 LDHBP07195 334 aaKnown RBP21.56■■□□□ 1.04
CCDC88C-203ENST00000389856 POLD1P28340 1107 aa21.56■■□□□ 1.04
CCDC88C-203ENST00000389856 AK2P54819 239 aa21.56■■□□□ 1.04
CCDC88C-203ENST00000389856 LAMA4Q16363 1823 aa21.56■■□□□ 1.04
CCDC88C-203ENST00000389856 LDHCP07864 332 aa21.55■■□□□ 1.04
CCDC88C-203ENST00000389856 NAPBQ9H115 298 aa21.55■■□□□ 1.04
CCDC88C-203ENST00000389856 DLEC1Q9Y238 1755 aa21.55■■□□□ 1.04
CCDC88C-203ENST00000389856 FSD2A1L4K1 749 aa21.55■■□□□ 1.04
CCDC88C-203ENST00000389856 GOLGA6L3A6NEY3 463 aa21.55■■□□□ 1.04
CCDC88C-203ENST00000389856 G3V3G9 751 aa21.55■■□□□ 1.04
CCDC88C-203ENST00000389856 TRDNQ13061 729 aa21.55■■□□□ 1.04
CCDC88C-203ENST00000389856 CUL4AQ13619 759 aa21.55■■□□□ 1.04
CCDC88C-203ENST00000389856 DCAF8Q5TAQ9 597 aa21.55■■□□□ 1.04
CCDC88C-203ENST00000389856 SLF2Q8IX21 1173 aa21.55■■□□□ 1.04
CCDC88C-203ENST00000389856 NSUN4Q96CB9 384 aaKnown RBP21.55■■□□□ 1.04
CCDC88C-203ENST00000389856 NOL10Q9BSC4 688 aaKnown RBP21.55■■□□□ 1.04
CCDC88C-203ENST00000389856 ARMT1Q9H993 441 aa21.55■■□□□ 1.04
CCDC88C-203ENST00000389856 E7EWF7 191 aa21.54■■□□□ 1.04
CCDC88C-203ENST00000389856 FGD1P98174 961 aa21.54■■□□□ 1.04
CCDC88C-203ENST00000389856 DHX32Q7L7V1 743 aaKnown RBP21.54■■□□□ 1.04
CCDC88C-203ENST00000389856 SUPT20HQ8NEM7 779 aa21.54■■□□□ 1.04
CCDC88C-203ENST00000389856 SLC4A4Q9Y6R1 1079 aa21.54■■□□□ 1.04
CCDC88C-203ENST00000389856 MECOMQ03112 1051 aa21.53■■□□□ 1.04
CCDC88C-203ENST00000389856 RALYLQ86SE5 291 aaKnown RBP21.53■■□□□ 1.04
CCDC88C-203ENST00000389856 CHMP4CQ96CF2 233 aa21.53■■□□□ 1.04
CCDC88C-203ENST00000389856 TDO2P48775 406 aa21.52■■□□□ 1.04
CCDC88C-203ENST00000389856 GIMAP6Q6P9H5 292 aa21.52■■□□□ 1.04
CCDC88C-203ENST00000389856 IFNL3Q8IZI9 196 aa21.52■■□□□ 1.04
CCDC88C-203ENST00000389856 NCOA7Q8NI08 942 aa21.52■■□□□ 1.04
CCDC88C-203ENST00000389856 MTFR1LQ9H019 292 aa21.52■■□□□ 1.04
CCDC88C-203ENST00000389856 FOXD4L1Q9NU39 408 aa21.52■■□□□ 1.04
CCDC88C-203ENST00000389856 SUGT1Q9Y2Z0 365 aa21.52■■□□□ 1.04
CCDC88C-203ENST00000389856 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.52■■□□□ 1.04
CCDC88C-203ENST00000389856 FAM205AQ6ZU69 1335 aa21.52■■□□□ 1.04
CCDC88C-203ENST00000389856 FOXP2O15409 715 aa21.51■■□□□ 1.03
CCDC88C-203ENST00000389856 BAG4O95429 457 aaKnown RBP21.51■■□□□ 1.03
CCDC88C-203ENST00000389856 NOL8Q76FK4 1167 aaKnown RBP21.51■■□□□ 1.03
CCDC88C-203ENST00000389856 LCORLQ8N3X6 602 aa21.51■■□□□ 1.03
CCDC88C-203ENST00000389856 MIGA1Q8NAN2 632 aa21.51■■□□□ 1.03
CCDC88C-203ENST00000389856 CRNKL1Q9BZJ0 848 aaKnown RBP21.51■■□□□ 1.03
CCDC88C-203ENST00000389856 WDR19Q8NEZ3 1342 aa21.51■■□□□ 1.03
CCDC88C-203ENST00000389856 BAG3O95817 575 aa21.51■■□□□ 1.03
CCDC88C-203ENST00000389856 CHRNA5P30532 468 aa21.51■■□□□ 1.03
CCDC88C-203ENST00000389856 TTLL5Q6EMB2 1281 aa21.51■■□□□ 1.03
CCDC88C-203ENST00000389856 GPR101Q96P66 508 aaPredicted RBP21.51■■□□□ 1.03
CCDC88C-203ENST00000389856 KIF13BQ9NQT8 1826 aa21.5■■□□□ 1.03
CCDC88C-203ENST00000389856 CPA1P15085 419 aa21.5■■□□□ 1.03
CCDC88C-203ENST00000389856 PRDX5P30044 214 aa21.5■■□□□ 1.03
CCDC88C-203ENST00000389856 RIOK1Q9BRS2 568 aaKnown RBP21.5■■□□□ 1.03
CCDC88C-203ENST00000389856 CNNM2Q9H8M5 875 aa21.5■■□□□ 1.03
CCDC88C-203ENST00000389856 SLX4Q8IY92 1834 aa21.49■■□□□ 1.03
CCDC88C-203ENST00000389856 GSG1L2A8MUP6 293 aa21.49■■□□□ 1.03
CCDC88C-203ENST00000389856 MCM5P33992 734 aa21.49■■□□□ 1.03
CCDC88C-203ENST00000389856 SOGA3Q5TF21 947 aa21.49■■□□□ 1.03
CCDC88C-203ENST00000389856 TTLL6Q8N841 843 aa21.49■■□□□ 1.03
CCDC88C-203ENST00000389856 RNF41Q9H4P4 317 aaPredicted RBP21.49■■□□□ 1.03
CCDC88C-203ENST00000389856 RIMBP2O15034 1052 aa21.48■■□□□ 1.03
CCDC88C-203ENST00000389856 MRE11P49959 708 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms