RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 SIPA1L3O60292 1781 aaPredicted RBP21.39■■□□□ 1.01
CCDC3-201ENST00000378825 MST1RQ04912 1400 aa21.39■■□□□ 1.01
CCDC3-201ENST00000378825 KLF18A0A0U1RQI7 1052 aa21.39■■□□□ 1.01
CCDC3-201ENST00000378825 KIF2AO00139 706 aaPredicted RBP21.39■■□□□ 1.01
CCDC3-201ENST00000378825 BMS1Q14692 1282 aaKnown RBP21.39■■□□□ 1.01
CCDC3-201ENST00000378825 CARD6Q9BX69 1037 aa21.39■■□□□ 1.01
CCDC3-201ENST00000378825 RXRAP19793 462 aa21.38■■□□□ 1.01
CCDC3-201ENST00000378825 CASP7P55210 303 aa21.38■■□□□ 1.01
CCDC3-201ENST00000378825 CABP4P57796 275 aa21.38■■□□□ 1.01
CCDC3-201ENST00000378825 MAPK8IP2Q13387 824 aaPredicted RBP21.38■■□□□ 1.01
CCDC3-201ENST00000378825 FBXO18Q8NFZ0 1043 aa21.38■■□□□ 1.01
CCDC3-201ENST00000378825 ZCCHC17Q9NP64 241 aaKnown RBP21.38■■□□□ 1.01
CCDC3-201ENST00000378825 HELLSQ9NRZ9 838 aa21.38■■□□□ 1.01
CCDC3-201ENST00000378825 GOLGA8BA8MQT2 603 aa21.38■■□□□ 1.01
CCDC3-201ENST00000378825 IRX5P78411 483 aaPredicted RBP21.38■■□□□ 1.01
CCDC3-201ENST00000378825 PNOCQ13519 176 aa21.38■■□□□ 1.01
CCDC3-201ENST00000378825 FKBP4Q02790 459 aaKnown RBP eCLIP21.37■■□□□ 1.01
CCDC3-201ENST00000378825 PUS3Q9BZE2 481 aaKnown RBP21.37■■□□□ 1.01
CCDC3-201ENST00000378825 CAMTA1Q9Y6Y1 1673 aa21.37■■□□□ 1.01
CCDC3-201ENST00000378825 RFX7Q2KHR2 1363 aa21.37■■□□□ 1.01
CCDC3-201ENST00000378825 VGLL3A8MV65 326 aa21.37■■□□□ 1.01
CCDC3-201ENST00000378825 HSPA2P54652 639 aa21.37■■□□□ 1.01
CCDC3-201ENST00000378825 DCAF5Q96JK2 942 aa21.37■■□□□ 1.01
CCDC3-201ENST00000378825 POLR3EQ9NVU0 708 aa21.37■■□□□ 1.01
CCDC3-201ENST00000378825 FOXO4P98177 505 aa21.36■■□□□ 1.01
CCDC3-201ENST00000378825 TAF3Q5VWG9 929 aa21.36■■□□□ 1.01
CCDC3-201ENST00000378825 KCNG4Q8TDN1 519 aa21.36■■□□□ 1.01
CCDC3-201ENST00000378825 CLIC6Q96NY7 704 aa21.36■■□□□ 1.01
CCDC3-201ENST00000378825 BPIFA3Q9BQP9 254 aa21.36■■□□□ 1.01
CCDC3-201ENST00000378825 UBE2Q2LH0YL09 131 aa21.36■■□□□ 1.01
CCDC3-201ENST00000378825 IFIT1P09914 478 aaKnown RBP21.36■■□□□ 1.01
CCDC3-201ENST00000378825 UBASH3AP57075 661 aa21.36■■□□□ 1.01
CCDC3-201ENST00000378825 ANO1Q5XXA6 986 aa21.36■■□□□ 1.01
CCDC3-201ENST00000378825 REXO1L1PQ8IX06 675 aa21.36■■□□□ 1.01
CCDC3-201ENST00000378825 UBXN4Q92575 508 aa21.36■■□□□ 1.01
CCDC3-201ENST00000378825 ZRANB2O95218 330 aaKnown RBP eCLIP21.35■■□□□ 1.01
CCDC3-201ENST00000378825 ANTXR2P58335 489 aa21.35■■□□□ 1.01
CCDC3-201ENST00000378825 CFAP100Q494V2 611 aa21.35■■□□□ 1.01
CCDC3-201ENST00000378825 RNF113AO15541 343 aaKnown RBP21.35■■□□□ 1.01
CCDC3-201ENST00000378825 PRC1O43663 620 aa21.35■■□□□ 1.01
CCDC3-201ENST00000378825 SERPINC1P01008 464 aa21.35■■□□□ 1.01
CCDC3-201ENST00000378825 PI16Q6UXB8 463 aa21.35■■□□□ 1.01
CCDC3-201ENST00000378825 NEK11Q8NG66 645 aa21.35■■□□□ 1.01
CCDC3-201ENST00000378825 AFDNP55196 1824 aaKnown RBP21.35■■□□□ 1.01
CCDC3-201ENST00000378825 SASH3O75995 380 aa21.35■■□□□ 1.01
CCDC3-201ENST00000378825 YEATS4O95619 227 aa21.35■■□□□ 1.01
CCDC3-201ENST00000378825 KIF23Q02241 960 aaPredicted RBP21.35■■□□□ 1.01
CCDC3-201ENST00000378825 SYNE3Q6ZMZ3 975 aa21.35■■□□□ 1.01
CCDC3-201ENST00000378825 ALS2Q96Q42 1657 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 FOXN1O15353 648 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 CDC27P30260 824 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 CYP2C19P33261 490 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 WDR24Q96S15 920 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 INTS13Q9NVM9 706 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 PARP3Q9Y6F1 533 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 A0A1B0GUL7 405 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 CCDC66A2RUB6 948 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 TADA3O75528 432 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 FGAP02671 866 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 HNRNPH2P55795 449 aaKnown RBP21.34■■□□□ 1.01
CCDC3-201ENST00000378825 ST5P78524 1137 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 WASHC4Q2M389 1173 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 SPECC1Q5M775 1068 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 SHC4Q6S5L8 630 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 FOXP4Q8IVH2 680 aaPredicted RBP21.34■■□□□ 1.01
CCDC3-201ENST00000378825 FANCLQ9NW38 375 aa21.34■■□□□ 1.01
CCDC3-201ENST00000378825 ADORA1P30542 326 aa21.33■■□□□ 1.01
CCDC3-201ENST00000378825 MNS1Q8NEH6 495 aa21.33■■□□□ 1.01
CCDC3-201ENST00000378825 CCDC85AQ96PX6 553 aaPredicted RBP21.33■■□□□ 1.01
CCDC3-201ENST00000378825 PDE4BQ07343 736 aa21.33■■□□□ 1
CCDC3-201ENST00000378825 SCARF1Q14162 830 aa21.33■■□□□ 1
CCDC3-201ENST00000378825 TIGD1Q96MW7 591 aa21.33■■□□□ 1
CCDC3-201ENST00000378825 KIF1AQ12756 1690 aa21.32■■□□□ 1
CCDC3-201ENST00000378825 VWA3AA6NCI4 1184 aa21.32■■□□□ 1
CCDC3-201ENST00000378825 CPLX1O14810 134 aa21.32■■□□□ 1
CCDC3-201ENST00000378825 SYKP43405 635 aa21.32■■□□□ 1
CCDC3-201ENST00000378825 CCDC34Q96HJ3 373 aa21.32■■□□□ 1
CCDC3-201ENST00000378825 SENP2Q9HC62 589 aa21.32■■□□□ 1
CCDC3-201ENST00000378825 CAPN2P17655 700 aa21.32■■□□□ 1
CCDC3-201ENST00000378825 CMA1P23946 247 aa21.32■■□□□ 1
CCDC3-201ENST00000378825 GYS2P54840 703 aa21.32■■□□□ 1
CCDC3-201ENST00000378825 TMCO3Q6UWJ1 677 aa21.32■■□□□ 1
CCDC3-201ENST00000378825 TTLL7Q6ZT98 887 aa21.32■■□□□ 1
CCDC3-201ENST00000378825 STK11IPQ8N1F8 1099 aa21.32■■□□□ 1
CCDC3-201ENST00000378825 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.32■■□□□ 1
CCDC3-201ENST00000378825 SCN11AQ9UI33 1791 aa21.31■■□□□ 1
CCDC3-201ENST00000378825 EVCP57679 992 aa21.31■■□□□ 1
CCDC3-201ENST00000378825 TMEM139Q8IV31 216 aa21.31■■□□□ 1
CCDC3-201ENST00000378825 PHKBQ93100 1093 aa21.31■■□□□ 1
CCDC3-201ENST00000378825 PUS7LQ9H0K6 701 aaKnown RBP21.31■■□□□ 1
CCDC3-201ENST00000378825 ADAMTS7Q9UKP4 1686 aa21.31■■□□□ 1
CCDC3-201ENST00000378825 NWD2Q9ULI1 1742 aa21.31■■□□□ 1
CCDC3-201ENST00000378825 NBPF26B4DH59 902 aa21.31■■□□□ 1
CCDC3-201ENST00000378825 BMP6P22004 513 aa21.31■■□□□ 1
CCDC3-201ENST00000378825 NBPF14Q5TI25 921 aa21.31■■□□□ 1
CCDC3-201ENST00000378825 NBPF10Q6P3W6 841 aaKnown RBP21.31■■□□□ 1
CCDC3-201ENST00000378825 NBPF15Q8N660 670 aa21.31■■□□□ 1
CCDC3-201ENST00000378825 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.31■■□□□ 1
CCDC3-201ENST00000378825 PHLPP2Q6ZVD8 1323 aa21.31■■□□□ 1
CCDC3-201ENST00000378825 TPM4P67936 248 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms