RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 NAA16Q6N069 864 aaPredicted RBP16.5■□□□□ 0.23
USF1-202ENST00000368020 RGS22Q8NE09 1264 aa16.5■□□□□ 0.23
USF1-202ENST00000368020 CDC5LQ99459 802 aaKnown RBP16.5■□□□□ 0.23
USF1-202ENST00000368020 H3BQV1 296 aa16.5■□□□□ 0.23
USF1-202ENST00000368020 MCM5P33992 734 aa16.5■□□□□ 0.23
USF1-202ENST00000368020 IFFO2Q5TF58 517 aa16.5■□□□□ 0.23
USF1-202ENST00000368020 CDC37L1Q7L3B6 337 aa16.5■□□□□ 0.23
USF1-202ENST00000368020 RALYLQ86SE5 291 aaKnown RBP16.5■□□□□ 0.23
USF1-202ENST00000368020 NCOA7Q8NI08 942 aa16.5■□□□□ 0.23
USF1-202ENST00000368020 POLRMTO00411 1230 aaKnown RBP16.49■□□□□ 0.23
USF1-202ENST00000368020 ZNF213O14771 459 aa16.49■□□□□ 0.23
USF1-202ENST00000368020 GTF2E1P29083 439 aaPredicted RBP16.49■□□□□ 0.23
USF1-202ENST00000368020 SCRN1Q12765 414 aa16.49■□□□□ 0.23
USF1-202ENST00000368020 TRDNQ13061 729 aa16.49■□□□□ 0.23
USF1-202ENST00000368020 UVSSAQ2YD98 709 aa16.49■□□□□ 0.23
USF1-202ENST00000368020 SLC9C2Q5TAH2 1124 aa16.49■□□□□ 0.23
USF1-202ENST00000368020 RBSNQ9H1K0 784 aa16.49■□□□□ 0.23
USF1-202ENST00000368020 CFAP45Q9UL16 551 aa16.49■□□□□ 0.23
USF1-202ENST00000368020 FAM177BA6PVY3 158 aa16.48■□□□□ 0.23
USF1-202ENST00000368020 FGAP02671 866 aa16.48■□□□□ 0.23
USF1-202ENST00000368020 SERPINB2P05120 415 aa16.48■□□□□ 0.23
USF1-202ENST00000368020 DDR1Q08345 913 aa16.48■□□□□ 0.23
USF1-202ENST00000368020 MAP3K12Q12852 859 aa16.48■□□□□ 0.23
USF1-202ENST00000368020 CNBD1Q8NA66 436 aa16.48■□□□□ 0.23
USF1-202ENST00000368020 MYO5AQ9Y4I1 1855 aaKnown RBP16.48■□□□□ 0.23
USF1-202ENST00000368020 CHD4Q14839 1912 aa16.48■□□□□ 0.23
USF1-202ENST00000368020 COL9A3Q14050 684 aaPredicted RBP16.48■□□□□ 0.23
USF1-202ENST00000368020 ERFEQ4G0M1 354 aa16.48■□□□□ 0.23
USF1-202ENST00000368020 PUS7LQ9H0K6 701 aaKnown RBP16.48■□□□□ 0.23
USF1-202ENST00000368020 CASZ1Q86V15 1759 aa16.47■□□□□ 0.23
USF1-202ENST00000368020 GOLGA6L4A6NEF3 574 aa16.47■□□□□ 0.23
USF1-202ENST00000368020 HCLS1P14317 486 aaPredicted RBP16.47■□□□□ 0.23
USF1-202ENST00000368020 ALX1Q15699 326 aa16.47■□□□□ 0.23
USF1-202ENST00000368020 SPATA5Q8NB90 893 aa16.47■□□□□ 0.23
USF1-202ENST00000368020 NSUN7Q8NE18 718 aaKnown RBP16.47■□□□□ 0.23
USF1-202ENST00000368020 A0A1B0GUL6 1792 aa16.46■□□□□ 0.23
USF1-202ENST00000368020 IDH1O75874 414 aaKnown RBP16.46■□□□□ 0.23
USF1-202ENST00000368020 MMP10P09238 476 aa16.46■□□□□ 0.23
USF1-202ENST00000368020 PDE6AP16499 860 aa16.46■□□□□ 0.23
USF1-202ENST00000368020 GNAT2P19087 354 aa16.46■□□□□ 0.23
USF1-202ENST00000368020 PHKA1P46020 1223 aa16.46■□□□□ 0.23
USF1-202ENST00000368020 APOBRQ0VD83 1088 aa16.46■□□□□ 0.23
USF1-202ENST00000368020 SF3B3Q15393 1217 aaKnown RBP16.46■□□□□ 0.23
USF1-202ENST00000368020 SLFNL1Q499Z3 407 aa16.46■□□□□ 0.23
USF1-202ENST00000368020 PRR5LQ6MZQ0 368 aa16.46■□□□□ 0.23
USF1-202ENST00000368020 PDLIM2Q96JY6 352 aa16.46■□□□□ 0.23
USF1-202ENST00000368020 SPATA32Q96LK8 384 aa16.46■□□□□ 0.23
USF1-202ENST00000368020 NRXN2Q9P2S2 1712 aa16.46■□□□□ 0.23
USF1-202ENST00000368020 SALL1Q9NSC2 1324 aa16.46■□□□□ 0.23
USF1-202ENST00000368020 PTPDC1A2A3K4 754 aa16.45■□□□□ 0.22
USF1-202ENST00000368020 NPHP1O15259 732 aa16.45■□□□□ 0.22
USF1-202ENST00000368020 FOXP2O15409 715 aa16.45■□□□□ 0.22
USF1-202ENST00000368020 PDIA3P30101 505 aaKnown RBP16.45■□□□□ 0.22
USF1-202ENST00000368020 MB21D2Q8IYB1 491 aaPredicted RBP16.45■□□□□ 0.22
USF1-202ENST00000368020 AIDAQ96BJ3 306 aa16.45■□□□□ 0.22
USF1-202ENST00000368020 RTN4Q9NQC3 1192 aaKnown RBP16.45■□□□□ 0.22
USF1-202ENST00000368020 PARP3Q9Y6F1 533 aa16.45■□□□□ 0.22
USF1-202ENST00000368020 ESPNB1AK53 854 aa16.45■□□□□ 0.22
USF1-202ENST00000368020 JAK2O60674 1132 aa16.45■□□□□ 0.22
USF1-202ENST00000368020 CLCN1P35523 988 aa16.45■□□□□ 0.22
USF1-202ENST00000368020 ST5P78524 1137 aa16.45■□□□□ 0.22
USF1-202ENST00000368020 PI16Q6UXB8 463 aa16.45■□□□□ 0.22
USF1-202ENST00000368020 NLRP3Q96P20 1036 aa16.45■□□□□ 0.22
USF1-202ENST00000368020 LRRC2Q9BYS8 371 aa16.45■□□□□ 0.22
USF1-202ENST00000368020 PDGFDQ9GZP0 370 aaPredicted RBP16.45■□□□□ 0.22
USF1-202ENST00000368020 PIH1D3Q9NQM4 214 aaKnown RBP16.45■□□□□ 0.22
USF1-202ENST00000368020 ZNF532Q9HCE3 1301 aa16.44■□□□□ 0.22
USF1-202ENST00000368020 PRC1O43663 620 aa16.44■□□□□ 0.22
USF1-202ENST00000368020 RESTQ13127 1097 aa16.44■□□□□ 0.22
USF1-202ENST00000368020 TTLL5Q6EMB2 1281 aa16.44■□□□□ 0.22
USF1-202ENST00000368020 FERMT3Q86UX7 667 aa16.44■□□□□ 0.22
USF1-202ENST00000368020 DDX19AQ9NUU7 478 aaKnown RBP16.44■□□□□ 0.22
USF1-202ENST00000368020 GNL3LQ9NVN8 582 aaKnown RBP16.44■□□□□ 0.22
USF1-202ENST00000368020 TIAM2Q8IVF5 1701 aa16.43■□□□□ 0.22
USF1-202ENST00000368020 TCRBV5S4A2TA0A5A2 114 aa16.43■□□□□ 0.22
USF1-202ENST00000368020 TTC6Q86TZ1 520 aa16.43■□□□□ 0.22
USF1-202ENST00000368020 ZNF396Q96N95 335 aaPredicted RBP16.43■□□□□ 0.22
USF1-202ENST00000368020 KLRG2A4D1S0 409 aaPredicted RBP16.42■□□□□ 0.22
USF1-202ENST00000368020 RASGRF1Q13972 1273 aa16.42■□□□□ 0.22
USF1-202ENST00000368020 R3HDM1Q15032 1099 aaKnown RBP16.42■□□□□ 0.22
USF1-202ENST00000368020 MSL1Q68DK7 614 aa16.42■□□□□ 0.22
USF1-202ENST00000368020 ANKRD18AQ8IVF6 992 aa16.42■□□□□ 0.22
USF1-202ENST00000368020 LEO1Q8WVC0 666 aaPredicted RBP16.42■□□□□ 0.22
USF1-202ENST00000368020 TMEM87BQ96K49 555 aa16.42■□□□□ 0.22
USF1-202ENST00000368020 BRIP1Q9BX63 1249 aa16.42■□□□□ 0.22
USF1-202ENST00000368020 MTFR1LQ9H019 292 aa16.42■□□□□ 0.22
USF1-202ENST00000368020 CNNM2Q9H8M5 875 aa16.42■□□□□ 0.22
USF1-202ENST00000368020 CDKL5O76039 1030 aa16.42■□□□□ 0.22
USF1-202ENST00000368020 APPP05067 770 aa16.42■□□□□ 0.22
USF1-202ENST00000368020 UBE4AQ14139 1066 aa16.42■□□□□ 0.22
USF1-202ENST00000368020 TMED8Q6PL24 325 aaPredicted RBP16.42■□□□□ 0.22
USF1-202ENST00000368020 STRBPQ96SI9 672 aaKnown RBP16.42■□□□□ 0.22
USF1-202ENST00000368020 NACAP1Q9BZK3 213 aa16.42■□□□□ 0.22
USF1-202ENST00000368020 SEC31BQ9NQW1 1179 aa16.42■□□□□ 0.22
USF1-202ENST00000368020 NAP1L2Q9ULW6 460 aaPredicted RBP16.42■□□□□ 0.22
USF1-202ENST00000368020 PATL2C9JE40 543 aaKnown RBP16.41■□□□□ 0.22
USF1-202ENST00000368020 CTDNEP1O95476 244 aa16.41■□□□□ 0.22
USF1-202ENST00000368020 CCDC192P0DO97 292 aa16.41■□□□□ 0.22
USF1-202ENST00000368020 HAND2P61296 217 aa16.41■□□□□ 0.22
USF1-202ENST00000368020 CHRNDQ07001 517 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms