RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RASGRF1Q13972 1273 aa24.36■■□□□ 1.49
CCDC88B-203ENST00000359902 OTUD7BQ6GQQ9 843 aa24.36■■□□□ 1.49
CCDC88B-203ENST00000359902 SASS6Q6UVJ0 657 aa24.36■■□□□ 1.49
CCDC88B-203ENST00000359902 CYB5R4Q7L1T6 521 aa24.36■■□□□ 1.49
CCDC88B-203ENST00000359902 ORC3Q9UBD5 711 aaPredicted RBP24.36■■□□□ 1.49
CCDC88B-203ENST00000359902 C8orf76Q96K31 380 aa24.36■■□□□ 1.49
CCDC88B-203ENST00000359902 GOLPH3LQ9H4A5 285 aa24.36■■□□□ 1.49
CCDC88B-203ENST00000359902 KIAA2012Q0VF49 1180 aa24.35■■□□□ 1.49
CCDC88B-203ENST00000359902 FBXO18Q8NFZ0 1043 aa24.35■■□□□ 1.49
CCDC88B-203ENST00000359902 AIDAQ96BJ3 306 aa24.35■■□□□ 1.49
CCDC88B-203ENST00000359902 CPLX1O14810 134 aa24.35■■□□□ 1.49
CCDC88B-203ENST00000359902 SNW1Q13573 536 aaKnown RBP24.35■■□□□ 1.49
CCDC88B-203ENST00000359902 ALX1Q15699 326 aa24.35■■□□□ 1.49
CCDC88B-203ENST00000359902 TTC12Q9H892 705 aaPredicted RBP24.35■■□□□ 1.49
CCDC88B-203ENST00000359902 ANGEL1Q9UNK9 670 aaKnown RBP24.35■■□□□ 1.49
CCDC88B-203ENST00000359902 NRAPQ86VF7 1730 aa24.35■■□□□ 1.49
CCDC88B-203ENST00000359902 NTSR2O95665 410 aa24.34■■□□□ 1.49
CCDC88B-203ENST00000359902 CCDC152Q4G0S7 254 aa24.34■■□□□ 1.49
CCDC88B-203ENST00000359902 RTEL1Q9NZ71 1219 aa24.34■■□□□ 1.49
CCDC88B-203ENST00000359902 MAGEB6Q8N7X4 407 aa24.34■■□□□ 1.49
CCDC88B-203ENST00000359902 NIP7Q9Y221 180 aaKnown RBP eCLIP24.34■■□□□ 1.49
CCDC88B-203ENST00000359902 RREB1Q92766 1687 aa24.34■■□□□ 1.49
CCDC88B-203ENST00000359902 MYH14Q7Z406 1995 aaKnown RBP24.34■■□□□ 1.49
CCDC88B-203ENST00000359902 SH2B2O14492 632 aaPredicted RBP24.33■■□□□ 1.49
CCDC88B-203ENST00000359902 MAP3K12Q12852 859 aa24.33■■□□□ 1.49
CCDC88B-203ENST00000359902 ENGASEQ8NFI3 743 aa24.33■■□□□ 1.49
CCDC88B-203ENST00000359902 SPATA31A5Q5VU36 1347 aa24.33■■□□□ 1.48
CCDC88B-203ENST00000359902 SPATA31A7Q8IWB4 1347 aa24.33■■□□□ 1.48
CCDC88B-203ENST00000359902 PATL2C9JE40 543 aaKnown RBP24.33■■□□□ 1.48
CCDC88B-203ENST00000359902 TPM2P07951 284 aa24.33■■□□□ 1.48
CCDC88B-203ENST00000359902 ME1P48163 572 aa24.33■■□□□ 1.48
CCDC88B-203ENST00000359902 TERF1P54274 439 aa24.33■■□□□ 1.48
CCDC88B-203ENST00000359902 RTL9Q8NET4 1388 aa24.32■■□□□ 1.48
CCDC88B-203ENST00000359902 B4E1Z4 1266 aa24.32■■□□□ 1.48
CCDC88B-203ENST00000359902 CTAGE5O15320 804 aa24.32■■□□□ 1.48
CCDC88B-203ENST00000359902 CCDC73Q6ZRK6 1079 aa24.32■■□□□ 1.48
CCDC88B-203ENST00000359902 GJB4Q9NTQ9 266 aa24.32■■□□□ 1.48
CCDC88B-203ENST00000359902 R3HCC1Q9Y3T6 440 aaKnown RBP24.32■■□□□ 1.48
CCDC88B-203ENST00000359902 ZMYM6O95789 1325 aa24.31■■□□□ 1.48
CCDC88B-203ENST00000359902 IGHMBP2P38935 993 aaKnown RBP24.31■■□□□ 1.48
CCDC88B-203ENST00000359902 ZNF165P49910 485 aa24.31■■□□□ 1.48
CCDC88B-203ENST00000359902 BCAMP50895 628 aa24.31■■□□□ 1.48
CCDC88B-203ENST00000359902 IFNL3Q8IZI9 196 aa24.31■■□□□ 1.48
CCDC88B-203ENST00000359902 DNAJC25Q9H1X3 360 aa24.31■■□□□ 1.48
CCDC88B-203ENST00000359902 EPB41L4AQ9HCS5 686 aaPredicted RBP24.31■■□□□ 1.48
CCDC88B-203ENST00000359902 PCDHA7Q9UN72 937 aa24.31■■□□□ 1.48
CCDC88B-203ENST00000359902 PHLPP1O60346 1717 aa24.31■■□□□ 1.48
CCDC88B-203ENST00000359902 NEDD4P46934 1319 aa24.31■■□□□ 1.48
CCDC88B-203ENST00000359902 MBD4O95243 580 aa24.3■■□□□ 1.48
CCDC88B-203ENST00000359902 POLR3DP05423 398 aaPredicted RBP24.3■■□□□ 1.48
CCDC88B-203ENST00000359902 FAM160A1Q05DH4 1040 aa24.3■■□□□ 1.48
CCDC88B-203ENST00000359902 TDRD7Q8NHU6 1098 aaKnown RBP24.3■■□□□ 1.48
CCDC88B-203ENST00000359902 IGDCC4Q8TDY8 1250 aa24.3■■□□□ 1.48
CCDC88B-203ENST00000359902 PIBF1Q8WXW3 757 aa24.3■■□□□ 1.48
CCDC88B-203ENST00000359902 C4AP0C0L4 1744 aa24.3■■□□□ 1.48
CCDC88B-203ENST00000359902 C4BP0C0L5 1744 aa24.3■■□□□ 1.48
CCDC88B-203ENST00000359902 FSIP1Q8NA03 581 aa24.3■■□□□ 1.48
CCDC88B-203ENST00000359902 LINC00301Q8NCQ3 95 aa24.3■■□□□ 1.48
CCDC88B-203ENST00000359902 TMEM87BQ96K49 555 aa24.3■■□□□ 1.48
CCDC88B-203ENST00000359902 SENP2Q9HC62 589 aa24.3■■□□□ 1.48
CCDC88B-203ENST00000359902 INCENPQ9NQS7 918 aa24.3■■□□□ 1.48
CCDC88B-203ENST00000359902 DOCK2Q92608 1830 aa24.29■■□□□ 1.48
CCDC88B-203ENST00000359902 CAVIN2O95810 425 aa24.29■■□□□ 1.48
CCDC88B-203ENST00000359902 BRAPQ7Z569 592 aa24.29■■□□□ 1.48
CCDC88B-203ENST00000359902 ARMT1Q9H993 441 aa24.29■■□□□ 1.48
CCDC88B-203ENST00000359902 CLIC4Q9Y696 253 aa24.29■■□□□ 1.48
CCDC88B-203ENST00000359902 METAP2P50579 478 aaKnown RBP eCLIP24.29■■□□□ 1.48
CCDC88B-203ENST00000359902 ADALQ6DHV7 355 aa24.29■■□□□ 1.48
CCDC88B-203ENST00000359902 APOA5Q6Q788 366 aa24.29■■□□□ 1.48
CCDC88B-203ENST00000359902 BARGINQ6ZT62 677 aa24.29■■□□□ 1.48
CCDC88B-203ENST00000359902 SPC24Q8NBT2 197 aa24.28■■□□□ 1.48
CCDC88B-203ENST00000359902 RGS22Q8NE09 1264 aa24.28■■□□□ 1.48
CCDC88B-203ENST00000359902 NAPBQ9H115 298 aa24.28■■□□□ 1.48
CCDC88B-203ENST00000359902 CICQ96RK0 1608 aaPredicted RBP24.28■■□□□ 1.48
CCDC88B-203ENST00000359902 NUTM2BA6NNL0 878 aaPredicted RBP24.28■■□□□ 1.48
CCDC88B-203ENST00000359902 GSG1L2A8MUP6 293 aa24.28■■□□□ 1.48
CCDC88B-203ENST00000359902 NUTM2EB1AL46 878 aaPredicted RBP24.28■■□□□ 1.48
CCDC88B-203ENST00000359902 KCNQ2O43526 872 aa24.28■■□□□ 1.48
CCDC88B-203ENST00000359902 KINO60870 393 aaKnown RBP24.28■■□□□ 1.48
CCDC88B-203ENST00000359902 CHRNDQ07001 517 aa24.28■■□□□ 1.48
CCDC88B-203ENST00000359902 MYSM1Q5VVJ2 828 aa24.28■■□□□ 1.48
CCDC88B-203ENST00000359902 NUTM2AQ8IVF1 878 aaPredicted RBP24.28■■□□□ 1.48
CCDC88B-203ENST00000359902 POLR3EQ9NVU0 708 aa24.28■■□□□ 1.48
CCDC88B-203ENST00000359902 KIF28PB7ZC32 967 aa24.27■■□□□ 1.48
CCDC88B-203ENST00000359902 A0A1W2PQ27 194 aa24.27■■□□□ 1.48
CCDC88B-203ENST00000359902 A0A1W2PQ64 194 aa24.27■■□□□ 1.48
CCDC88B-203ENST00000359902 A0A1W2PQD8 194 aa24.27■■□□□ 1.48
CCDC88B-203ENST00000359902 TPM3P06753 285 aa24.27■■□□□ 1.48
CCDC88B-203ENST00000359902 RXRAP19793 462 aa24.27■■□□□ 1.48
CCDC88B-203ENST00000359902 CDC27P30260 824 aa24.27■■□□□ 1.48
CCDC88B-203ENST00000359902 KIF23Q02241 960 aaPredicted RBP24.27■■□□□ 1.48
CCDC88B-203ENST00000359902 CTDSPL2Q05D32 466 aa24.27■■□□□ 1.48
CCDC88B-203ENST00000359902 SMARCC1Q92922 1105 aaPredicted RBP24.27■■□□□ 1.48
CCDC88B-203ENST00000359902 LY9Q9HBG7 655 aa24.27■■□□□ 1.48
CCDC88B-203ENST00000359902 TACC3Q9Y6A5 838 aa24.27■■□□□ 1.48
CCDC88B-203ENST00000359902 YEATS4O95619 227 aa24.26■■□□□ 1.47
CCDC88B-203ENST00000359902 NOLC1Q14978 699 aaKnown RBP eCLIP24.26■■□□□ 1.47
CCDC88B-203ENST00000359902 SGMS1Q86VZ5 419 aa24.26■■□□□ 1.47
CCDC88B-203ENST00000359902 FMR1NBQ8N0W7 255 aaPredicted RBP24.26■■□□□ 1.47
CCDC88B-203ENST00000359902 MRPS27Q92552 414 aaKnown RBP24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms