RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 SLC10A3P09131 477 aa22.81■■□□□ 1.24
CLN3-202ENST00000355477 NF2P35240 595 aa22.81■■□□□ 1.24
CLN3-202ENST00000355477 PHKA1P46020 1223 aa22.81■■□□□ 1.24
CLN3-202ENST00000355477 PRKG1Q13976 671 aa22.81■■□□□ 1.24
CLN3-202ENST00000355477 TTLL12Q14166 644 aaPredicted RBP22.81■■□□□ 1.24
CLN3-202ENST00000355477 SPDYE2Q495Y8 402 aa22.81■■□□□ 1.24
CLN3-202ENST00000355477 BEGAINQ9BUH8 593 aa22.81■■□□□ 1.24
CLN3-202ENST00000355477 C1orf115Q9H7X2 142 aa22.81■■□□□ 1.24
CLN3-202ENST00000355477 PRDM10Q9NQV6 1147 aa22.81■■□□□ 1.24
CLN3-202ENST00000355477 ZNF70Q9UC06 446 aaPredicted RBP22.81■■□□□ 1.24
CLN3-202ENST00000355477 FZD1Q9UP38 647 aa22.81■■□□□ 1.24
CLN3-202ENST00000355477 KIF23Q02241 960 aaPredicted RBP22.8■■□□□ 1.24
CLN3-202ENST00000355477 RASAL3Q86YV0 1011 aa22.8■■□□□ 1.24
CLN3-202ENST00000355477 PANK1Q8TE04 598 aa22.8■■□□□ 1.24
CLN3-202ENST00000355477 SSC5DA1L4H1 1573 aa22.8■■□□□ 1.24
CLN3-202ENST00000355477 HDLBPQ00341 1268 aaKnown RBP22.79■■□□□ 1.24
CLN3-202ENST00000355477 WDR66Q8TBY9 1149 aa22.79■■□□□ 1.24
CLN3-202ENST00000355477 TSKSQ9UJT2 592 aa22.79■■□□□ 1.24
CLN3-202ENST00000355477 PPP2R3BQ9Y5P8 575 aa22.79■■□□□ 1.24
CLN3-202ENST00000355477 CASP8AP2Q9UKL3 1982 aa22.78■■□□□ 1.24
CLN3-202ENST00000355477 ATP8B2P98198 1209 aa22.78■■□□□ 1.24
CLN3-202ENST00000355477 RASA3Q14644 834 aa22.78■■□□□ 1.24
CLN3-202ENST00000355477 NBPF12Q5TAG4 269 aaPredicted RBP22.78■■□□□ 1.24
CLN3-202ENST00000355477 CCDC102BQ68D86 513 aa22.78■■□□□ 1.24
CLN3-202ENST00000355477 TNS4Q8IZW8 715 aa22.78■■□□□ 1.24
CLN3-202ENST00000355477 MRIQ9BWK5 157 aa22.78■■□□□ 1.24
CLN3-202ENST00000355477 GNL3LQ9NVN8 582 aaKnown RBP22.78■■□□□ 1.24
CLN3-202ENST00000355477 SUGT1Q9Y2Z0 365 aa22.78■■□□□ 1.24
CLN3-202ENST00000355477 A0A1B0GUL7 405 aa22.77■■□□□ 1.24
CLN3-202ENST00000355477 POLA2Q14181 598 aa22.77■■□□□ 1.24
CLN3-202ENST00000355477 TEKT1Q969V4 418 aa22.77■■□□□ 1.24
CLN3-202ENST00000355477 XAGE2Q96GT9 111 aa22.77■■□□□ 1.24
CLN3-202ENST00000355477 AKAP2Q9Y2D5 859 aa22.77■■□□□ 1.24
CLN3-202ENST00000355477 G3BP1Q13283 466 aaKnown RBP eCLIP22.76■■□□□ 1.23
CLN3-202ENST00000355477 ARMC9Q7Z3E5 817 aa22.76■■□□□ 1.23
CLN3-202ENST00000355477 SSH3Q8TE77 659 aa22.76■■□□□ 1.23
CLN3-202ENST00000355477 ZDHHC15Q96MV8 337 aa22.76■■□□□ 1.23
CLN3-202ENST00000355477 ANGEL1Q9UNK9 670 aaKnown RBP22.76■■□□□ 1.23
CLN3-202ENST00000355477 MYH2Q9UKX2 1941 aa22.76■■□□□ 1.23
CLN3-202ENST00000355477 TCP10L2B9ZVM9 353 aa22.75■■□□□ 1.23
CLN3-202ENST00000355477 SEMA3EO15041 775 aa22.75■■□□□ 1.23
CLN3-202ENST00000355477 LDLRAD1Q5T700 205 aa22.75■■□□□ 1.23
CLN3-202ENST00000355477 APOBEC3HQ6NTF7 200 aaKnown RBP22.75■■□□□ 1.23
CLN3-202ENST00000355477 CSRNP1Q96S65 589 aa22.75■■□□□ 1.23
CLN3-202ENST00000355477 DENND2AQ9ULE3 1009 aa22.75■■□□□ 1.23
CLN3-202ENST00000355477 PRDX5P30044 214 aa22.74■■□□□ 1.23
CLN3-202ENST00000355477 CACNB3P54284 484 aa22.74■■□□□ 1.23
CLN3-202ENST00000355477 SUPT20HL1Q3ZLR7 823 aa22.74■■□□□ 1.23
CLN3-202ENST00000355477 HHIPL2Q6UWX4 724 aa22.74■■□□□ 1.23
CLN3-202ENST00000355477 CDAN1Q8IWY9 1227 aa22.74■■□□□ 1.23
CLN3-202ENST00000355477 TEPSINQ96N21 525 aa22.74■■□□□ 1.23
CLN3-202ENST00000355477 NEUROD6Q96NK8 337 aa22.74■■□□□ 1.23
CLN3-202ENST00000355477 MAST3O60307 1309 aa22.74■■□□□ 1.23
CLN3-202ENST00000355477 ZBTB22O15209 634 aa22.73■■□□□ 1.23
CLN3-202ENST00000355477 CA12O43570 354 aa22.73■■□□□ 1.23
CLN3-202ENST00000355477 TNFAIP1Q13829 316 aa22.73■■□□□ 1.23
CLN3-202ENST00000355477 RASGRF1Q13972 1273 aa22.73■■□□□ 1.23
CLN3-202ENST00000355477 RCAN3Q9UKA8 241 aa22.73■■□□□ 1.23
CLN3-202ENST00000355477 SALL1Q9NSC2 1324 aa22.73■■□□□ 1.23
CLN3-202ENST00000355477 OTOFQ9HC10 1997 aa22.72■■□□□ 1.23
CLN3-202ENST00000355477 DIXDC1Q155Q3 683 aa22.72■■□□□ 1.23
CLN3-202ENST00000355477 MAP3K11Q16584 847 aa22.72■■□□□ 1.23
CLN3-202ENST00000355477 TMEM39BQ9GZU3 492 aa22.72■■□□□ 1.23
CLN3-202ENST00000355477 PPP1R12BO60237 982 aaPredicted RBP22.71■■□□□ 1.23
CLN3-202ENST00000355477 USP2O75604 605 aaPredicted RBP22.71■■□□□ 1.23
CLN3-202ENST00000355477 LDHBP07195 334 aaKnown RBP22.71■■□□□ 1.23
CLN3-202ENST00000355477 MVPQ14764 893 aaKnown RBP22.71■■□□□ 1.23
CLN3-202ENST00000355477 AK9Q5TCS8 1911 aa22.7■■□□□ 1.23
CLN3-202ENST00000355477 SURF6O75683 361 aaKnown RBP22.7■■□□□ 1.22
CLN3-202ENST00000355477 MKRN3Q13064 507 aaKnown RBP22.7■■□□□ 1.22
CLN3-202ENST00000355477 CLMNQ96JQ2 1002 aa22.7■■□□□ 1.22
CLN3-202ENST00000355477 RNF186Q9NXI6 227 aa22.7■■□□□ 1.22
CLN3-202ENST00000355477 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.7■■□□□ 1.22
CLN3-202ENST00000355477 DAGLAQ9Y4D2 1042 aa22.7■■□□□ 1.22
CLN3-202ENST00000355477 TNNI2P48788 182 aa22.69■■□□□ 1.22
CLN3-202ENST00000355477 CEP85Q6P2H3 762 aa22.69■■□□□ 1.22
CLN3-202ENST00000355477 NOP58Q9Y2X3 529 aaKnown RBP22.69■■□□□ 1.22
CLN3-202ENST00000355477 PDS5AQ29RF7 1337 aaKnown RBP22.68■■□□□ 1.22
CLN3-202ENST00000355477 TRPA1O75762 1119 aa22.68■■□□□ 1.22
CLN3-202ENST00000355477 MS4A1P11836 297 aa22.68■■□□□ 1.22
CLN3-202ENST00000355477 OS9Q13438 667 aaPredicted RBP22.68■■□□□ 1.22
CLN3-202ENST00000355477 GORABQ5T7V8 394 aa22.68■■□□□ 1.22
CLN3-202ENST00000355477 SLC10A4Q96EP9 437 aa22.68■■□□□ 1.22
CLN3-202ENST00000355477 COG6Q9Y2V7 657 aa22.68■■□□□ 1.22
CLN3-202ENST00000355477 TNNI3KQ59H18 835 aa22.67■■□□□ 1.22
CLN3-202ENST00000355477 FKBP1CQ5VVH2 108 aa22.67■■□□□ 1.22
CLN3-202ENST00000355477 SPRYD7Q5W111 196 aa22.67■■□□□ 1.22
CLN3-202ENST00000355477 REM2Q8IYK8 340 aaPredicted RBP22.67■■□□□ 1.22
CLN3-202ENST00000355477 GPR108Q9NPR9 543 aa22.67■■□□□ 1.22
CLN3-202ENST00000355477 SAGE1Q9NXZ1 904 aa22.67■■□□□ 1.22
CLN3-202ENST00000355477 HMG20BQ9P0W2 317 aa22.67■■□□□ 1.22
CLN3-202ENST00000355477 ABCF2Q9UG63 623 aa22.67■■□□□ 1.22
CLN3-202ENST00000355477 FPGT-TNNI3KV9GXZ4 949 aa22.67■■□□□ 1.22
CLN3-202ENST00000355477 LAMB1P07942 1786 aa22.66■■□□□ 1.22
CLN3-202ENST00000355477 IREB2P48200 963 aaKnown RBP22.66■■□□□ 1.22
CLN3-202ENST00000355477 CDC42EP5Q6NZY7 148 aa22.66■■□□□ 1.22
CLN3-202ENST00000355477 PI16Q6UXB8 463 aa22.66■■□□□ 1.22
CLN3-202ENST00000355477 FAM83AQ86UY5 434 aa22.66■■□□□ 1.22
CLN3-202ENST00000355477 ZGPATQ8N5A5 531 aaKnown RBP22.66■■□□□ 1.22
CLN3-202ENST00000355477 TMOD2Q9NZR1 351 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms