RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 ORC3Q9UBD5 711 aaPredicted RBP13.04□□□□□ -0.32
SVIP-201ENST00000354193 HMGB1P09429 215 aaKnown RBP13.04□□□□□ -0.32
SVIP-201ENST00000354193 STX8Q9UNK0 236 aa13.04□□□□□ -0.32
SVIP-201ENST00000354193 SLC12A7Q9Y666 1083 aa13.04□□□□□ -0.32
SVIP-201ENST00000354193 LTBP4Q8N2S1 1624 aa13.04□□□□□ -0.32
SVIP-201ENST00000354193 SCN11AQ9UI33 1791 aa13.04□□□□□ -0.32
SVIP-201ENST00000354193 PTMAP06454 111 aaKnown RBP13.03□□□□□ -0.32
SVIP-201ENST00000354193 STOX1Q6ZVD7 989 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 KCPQ6ZWJ8 1503 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 SYCE3A1L190 88 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 USP17L12C9JPN9 530 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 USP17L21D6R901 530 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 GYS1P13807 737 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 UBE4AQ14139 1066 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 ZNF804AQ7Z570 1209 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 FAM84BQ96KN1 310 aaPredicted RBP13.03□□□□□ -0.32
SVIP-201ENST00000354193 LRRC37A3O60309 1634 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 SLIT2O94813 1529 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 GOLGA8AA7E2F4 631 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 SCNN1DP51172 638 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 SKOR2Q2VWA4 1001 aaPredicted RBP13.03□□□□□ -0.32
SVIP-201ENST00000354193 IFNL3Q8IZI9 196 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 CNTNAP4Q9C0A0 1308 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 TSPY2A6NKD2 308 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 EZH2Q15910 746 aaKnown RBP13.03□□□□□ -0.32
SVIP-201ENST00000354193 CAMK4Q16566 473 aa13.03□□□□□ -0.32
SVIP-201ENST00000354193 ZSCAN22P10073 491 aaPredicted RBP13.02□□□□□ -0.32
SVIP-201ENST00000354193 MFSD14BQ5SR56 506 aa13.02□□□□□ -0.32
SVIP-201ENST00000354193 RC3H1Q5TC82 1133 aaKnown RBP13.02□□□□□ -0.32
SVIP-201ENST00000354193 DPP8Q6V1X1 898 aaPredicted RBP13.02□□□□□ -0.32
SVIP-201ENST00000354193 MAPKAPK5Q8IW41 473 aa13.02□□□□□ -0.32
SVIP-201ENST00000354193 DSCC1Q9BVC3 393 aa13.02□□□□□ -0.32
SVIP-201ENST00000354193 KDM3BQ7LBC6 1761 aa13.02□□□□□ -0.32
SVIP-201ENST00000354193 PTPDC1A2A3K4 754 aa13.02□□□□□ -0.33
SVIP-201ENST00000354193 METAP2P50579 478 aaKnown RBP eCLIP13.02□□□□□ -0.33
SVIP-201ENST00000354193 NLGN1Q8N2Q7 840 aa13.02□□□□□ -0.33
SVIP-201ENST00000354193 PHKBQ93100 1093 aa13.02□□□□□ -0.33
SVIP-201ENST00000354193 COL14A1Q05707 1796 aaKnown RBP13.02□□□□□ -0.33
SVIP-201ENST00000354193 FAM47AQ5JRC9 791 aa13.02□□□□□ -0.33
SVIP-201ENST00000354193 DBNDD1Q9H9R9 158 aa13.02□□□□□ -0.33
SVIP-201ENST00000354193 ATF5Q9Y2D1 282 aaPredicted RBP13.02□□□□□ -0.33
SVIP-201ENST00000354193 KRT85P78386 507 aa13.01□□□□□ -0.33
SVIP-201ENST00000354193 SLC26A6Q9BXS9 759 aa13.01□□□□□ -0.33
SVIP-201ENST00000354193 CRNKL1Q9BZJ0 848 aaKnown RBP13.01□□□□□ -0.33
SVIP-201ENST00000354193 CHRNA5P30532 468 aa13.01□□□□□ -0.33
SVIP-201ENST00000354193 ADD1P35611 737 aaKnown RBP13.01□□□□□ -0.33
SVIP-201ENST00000354193 CDC37L1Q7L3B6 337 aa13.01□□□□□ -0.33
SVIP-201ENST00000354193 C8orf76Q96K31 380 aa13.01□□□□□ -0.33
SVIP-201ENST00000354193 TRIM34Q9BYJ4 488 aa13.01□□□□□ -0.33
SVIP-201ENST00000354193 GJB4Q9NTQ9 266 aa13.01□□□□□ -0.33
SVIP-201ENST00000354193 ME1P48163 572 aa13.01□□□□□ -0.33
SVIP-201ENST00000354193 COL23A1Q86Y22 540 aaPredicted RBP13.01□□□□□ -0.33
SVIP-201ENST00000354193 SPATA32Q96LK8 384 aa13.01□□□□□ -0.33
SVIP-201ENST00000354193 GRAPQ13588 217 aa13.01□□□□□ -0.33
SVIP-201ENST00000354193 USP48Q86UV5 1035 aa13.01□□□□□ -0.33
SVIP-201ENST00000354193 GRAPLQ8TC17 118 aaPredicted RBP13.01□□□□□ -0.33
SVIP-201ENST00000354193 TGFBRAP1Q8WUH2 860 aa13.01□□□□□ -0.33
SVIP-201ENST00000354193 SYAP1Q96A49 352 aaPredicted RBP13.01□□□□□ -0.33
SVIP-201ENST00000354193 PARP4Q9UKK3 1724 aaKnown RBP13.01□□□□□ -0.33
SVIP-201ENST00000354193 MPHOSPH10O00566 681 aaKnown RBP13□□□□□ -0.33
SVIP-201ENST00000354193 SF3B3Q15393 1217 aaKnown RBP13□□□□□ -0.33
SVIP-201ENST00000354193 C2CD5Q86YS7 1000 aa13□□□□□ -0.33
SVIP-201ENST00000354193 C5P01031 1676 aa13□□□□□ -0.33
SVIP-201ENST00000354193 TULP1O00294 542 aaPredicted RBP13□□□□□ -0.33
SVIP-201ENST00000354193 WTAPQ15007 396 aa13□□□□□ -0.33
SVIP-201ENST00000354193 L1TD1Q5T7N2 865 aaKnown RBP13□□□□□ -0.33
SVIP-201ENST00000354193 LRP6O75581 1613 aa13□□□□□ -0.33
SVIP-201ENST00000354193 ZBTB43O43298 467 aa13□□□□□ -0.33
SVIP-201ENST00000354193 ZBTB7AO95365 584 aa13□□□□□ -0.33
SVIP-201ENST00000354193 SLC3A2P08195 630 aaKnown RBP13□□□□□ -0.33
SVIP-201ENST00000354193 IQCA1Q86XH1 822 aa13□□□□□ -0.33
SVIP-201ENST00000354193 KIAA0825Q8IV33 1275 aa13□□□□□ -0.33
SVIP-201ENST00000354193 TM6SF1Q9BZW5 370 aa13□□□□□ -0.33
SVIP-201ENST00000354193 H0YIN7 160 aa13□□□□□ -0.33
SVIP-201ENST00000354193 STRBPQ96SI9 672 aaKnown RBP13□□□□□ -0.33
SVIP-201ENST00000354193 VAT1LQ9HCJ6 419 aa13□□□□□ -0.33
SVIP-201ENST00000354193 CARMIL3Q8ND23 1372 aa12.99□□□□□ -0.33
SVIP-201ENST00000354193 GADD45BO75293 160 aaPredicted RBP12.99□□□□□ -0.33
SVIP-201ENST00000354193 F13A1P00488 732 aa12.99□□□□□ -0.33
SVIP-201ENST00000354193 EIF6P56537 245 aaKnown RBP12.99□□□□□ -0.33
SVIP-201ENST00000354193 UBE3CQ15386 1083 aa12.99□□□□□ -0.33
SVIP-201ENST00000354193 INTS4Q96HW7 963 aaKnown RBP12.99□□□□□ -0.33
SVIP-201ENST00000354193 PATL2C9JE40 543 aaKnown RBP12.99□□□□□ -0.33
SVIP-201ENST00000354193 SMIM22K7EJ46 135 aa12.99□□□□□ -0.33
SVIP-201ENST00000354193 MECOMQ03112 1051 aa12.99□□□□□ -0.33
SVIP-201ENST00000354193 TCP10Q12799 353 aa12.99□□□□□ -0.33
SVIP-201ENST00000354193 ZNF827Q17R98 1081 aa12.99□□□□□ -0.33
SVIP-201ENST00000354193 AK9Q5TCS8 1911 aa12.99□□□□□ -0.33
SVIP-201ENST00000354193 BAG3O95817 575 aa12.99□□□□□ -0.33
SVIP-201ENST00000354193 PTMSP20962 102 aa12.99□□□□□ -0.33
SVIP-201ENST00000354193 SCRN1Q12765 414 aa12.99□□□□□ -0.33
SVIP-201ENST00000354193 TOB2Q14106 344 aaPredicted RBP12.99□□□□□ -0.33
SVIP-201ENST00000354193 BAG6P46379 1132 aa12.98□□□□□ -0.33
SVIP-201ENST00000354193 GPSM2P81274 684 aa12.98□□□□□ -0.33
SVIP-201ENST00000354193 STK38Q15208 465 aa12.98□□□□□ -0.33
SVIP-201ENST00000354193 TBC1D10CQ8IV04 446 aa12.98□□□□□ -0.33
SVIP-201ENST00000354193 ZNF444Q8N0Y2 327 aaPredicted RBP12.98□□□□□ -0.33
SVIP-201ENST00000354193 TTC14Q96N46 770 aa12.98□□□□□ -0.33
SVIP-201ENST00000354193 SPTY2D1Q68D10 685 aaPredicted RBP12.98□□□□□ -0.33
SVIP-201ENST00000354193 TRIM22Q8IYM9 498 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms