RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 TRIM47Q96LD4 638 aa10.24□□□□□ -0.77
CD44-205ENST00000352818 SRRDQ9UH36 339 aa10.24□□□□□ -0.77
CD44-205ENST00000352818 RIPOR2Q9Y4F9 1068 aa10.24□□□□□ -0.77
CD44-205ENST00000352818 HOXB7P09629 217 aa10.23□□□□□ -0.77
CD44-205ENST00000352818 PARP10Q53GL7 1025 aa10.23□□□□□ -0.77
CD44-205ENST00000352818 TJAP1Q5JTD0 557 aa10.23□□□□□ -0.77
CD44-205ENST00000352818 LRP10Q7Z4F1 713 aa10.23□□□□□ -0.77
CD44-205ENST00000352818 SKAP1Q86WV1 359 aa10.23□□□□□ -0.77
CD44-205ENST00000352818 USP38Q8NB14 1042 aa10.23□□□□□ -0.77
CD44-205ENST00000352818 PAWRQ96IZ0 340 aaKnown RBP10.23□□□□□ -0.77
CD44-205ENST00000352818 ZFYVE28Q9HCC9 887 aa10.23□□□□□ -0.77
CD44-205ENST00000352818 DDX60Q8IY21 1712 aaKnown RBP10.22□□□□□ -0.77
CD44-205ENST00000352818 MUC6Q6W4X9 2439 aa10.22□□□□□ -0.77
CD44-205ENST00000352818 ELL2O00472 640 aaPredicted RBP10.22□□□□□ -0.77
CD44-205ENST00000352818 TLR2O60603 784 aa10.22□□□□□ -0.77
CD44-205ENST00000352818 USP2O75604 605 aaPredicted RBP10.22□□□□□ -0.77
CD44-205ENST00000352818 OSBPP22059 807 aa10.22□□□□□ -0.77
CD44-205ENST00000352818 RGS3P49796 1198 aa10.22□□□□□ -0.77
CD44-205ENST00000352818 PRMT2P55345 433 aa10.22□□□□□ -0.77
CD44-205ENST00000352818 TAF7Q15545 349 aaPredicted RBP10.22□□□□□ -0.77
CD44-205ENST00000352818 KIF6Q6ZMV9 814 aa10.22□□□□□ -0.77
CD44-205ENST00000352818 IPO9Q96P70 1041 aaKnown RBP10.22□□□□□ -0.77
CD44-205ENST00000352818 EYA3Q99504 573 aa10.22□□□□□ -0.77
CD44-205ENST00000352818 CHMP4AQ9BY43 222 aa10.22□□□□□ -0.77
CD44-205ENST00000352818 UBE2OQ9C0C9 1292 aaKnown RBP10.22□□□□□ -0.77
CD44-205ENST00000352818 ANKRD36CQ5JPF3 1778 aa10.21□□□□□ -0.77
CD44-205ENST00000352818 GNRH1P01148 92 aa10.21□□□□□ -0.77
CD44-205ENST00000352818 KRT24Q2M2I5 525 aa10.21□□□□□ -0.77
CD44-205ENST00000352818 NLRP10Q86W26 655 aa10.21□□□□□ -0.77
CD44-205ENST00000352818 MYLIPQ8WY64 445 aa10.21□□□□□ -0.77
CD44-205ENST00000352818 OPTNQ96CV9 577 aa10.21□□□□□ -0.77
CD44-205ENST00000352818 ZC3H12CQ9C0D7 883 aaKnown RBP10.21□□□□□ -0.77
CD44-205ENST00000352818 CRISPLD2Q9H0B8 497 aa10.21□□□□□ -0.77
CD44-205ENST00000352818 DEFB129Q9H1M3 183 aa10.21□□□□□ -0.77
CD44-205ENST00000352818 SEMA6BQ9H3T3 888 aa10.21□□□□□ -0.77
CD44-205ENST00000352818 ARIH1Q9Y4X5 557 aaPredicted RBP10.21□□□□□ -0.77
CD44-205ENST00000352818 CCL15-CCL14A0A0B4J2E2 113 aa10.2□□□□□ -0.78
CD44-205ENST00000352818 USP17L3A6NCW0 530 aa10.2□□□□□ -0.78
CD44-205ENST00000352818 USP17L4A6NCW7 530 aa10.2□□□□□ -0.78
CD44-205ENST00000352818 UNCXA6NJT0 531 aa10.2□□□□□ -0.78
CD44-205ENST00000352818 MYL6BP14649 208 aa10.2□□□□□ -0.78
CD44-205ENST00000352818 CCL15Q16663 113 aa10.2□□□□□ -0.78
CD44-205ENST00000352818 DACT2Q5SW24 774 aa10.2□□□□□ -0.78
CD44-205ENST00000352818 CCDC30Q5VVM6 783 aa10.2□□□□□ -0.78
CD44-205ENST00000352818 USP17L1Q7RTZ2 530 aa10.2□□□□□ -0.78
CD44-205ENST00000352818 APOBEC3FQ8IUX4 373 aaKnown RBP10.2□□□□□ -0.78
CD44-205ENST00000352818 TTYH1Q9H313 450 aaPredicted RBP10.2□□□□□ -0.78
CD44-205ENST00000352818 PODXL2Q9NZ53 605 aa10.2□□□□□ -0.78
CD44-205ENST00000352818 AOX1Q06278 1338 aa10.19□□□□□ -0.78
CD44-205ENST00000352818 PSMC4P43686 418 aa10.19□□□□□ -0.78
CD44-205ENST00000352818 NUCB1Q02818 461 aa10.19□□□□□ -0.78
CD44-205ENST00000352818 NBPF12Q5TAG4 269 aaPredicted RBP10.19□□□□□ -0.78
CD44-205ENST00000352818 C17orf99Q6UX52 265 aa10.19□□□□□ -0.78
CD44-205ENST00000352818 ALYREFQ86V81 257 aaKnown RBP10.19□□□□□ -0.78
CD44-205ENST00000352818 DDRGK1Q96HY6 314 aa10.19□□□□□ -0.78
CD44-205ENST00000352818 DEFB118Q96PH6 123 aa10.19□□□□□ -0.78
CD44-205ENST00000352818 STK31Q9BXU1 1019 aa10.19□□□□□ -0.78
CD44-205ENST00000352818 ELP3Q9H9T3 547 aa10.19□□□□□ -0.78
CD44-205ENST00000352818 MIS18AQ9NYP9 233 aa10.19□□□□□ -0.78
CD44-205ENST00000352818 PCDHAC2Q9Y5I4 1007 aa10.19□□□□□ -0.78
CD44-205ENST00000352818 UFL1O94874 794 aa10.18□□□□□ -0.78
CD44-205ENST00000352818 TFRCP02786 760 aaKnown RBP10.18□□□□□ -0.78
CD44-205ENST00000352818 CCT4P50991 539 aaKnown RBP10.18□□□□□ -0.78
CD44-205ENST00000352818 PRKCZQ05513 592 aa10.18□□□□□ -0.78
CD44-205ENST00000352818 ZNF697Q5TEC3 545 aa10.18□□□□□ -0.78
CD44-205ENST00000352818 RAET1EQ8TD07 263 aa10.18□□□□□ -0.78
CD44-205ENST00000352818 PAK6Q9NQU5 681 aaPredicted RBP10.18□□□□□ -0.78
CD44-205ENST00000352818 PSME4Q14997 1843 aa10.18□□□□□ -0.78
CD44-205ENST00000352818 XIRP2A4UGR9 3374 aa10.18□□□□□ -0.78
CD44-205ENST00000352818 MYPNQ86TC9 1320 aa10.17□□□□□ -0.78
CD44-205ENST00000352818 ADGRA2Q96PE1 1338 aa10.17□□□□□ -0.78
CD44-205ENST00000352818 PPP1R12BO60237 982 aaPredicted RBP10.17□□□□□ -0.78
CD44-205ENST00000352818 SLC4A2P04920 1241 aa10.17□□□□□ -0.78
CD44-205ENST00000352818 EIF4A1P60842 406 aaKnown RBP10.17□□□□□ -0.78
CD44-205ENST00000352818 KIF22Q14807 665 aa10.17□□□□□ -0.78
CD44-205ENST00000352818 PDIA6Q15084 440 aa10.17□□□□□ -0.78
CD44-205ENST00000352818 SF3B3Q15393 1217 aaKnown RBP10.17□□□□□ -0.78
CD44-205ENST00000352818 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.17□□□□□ -0.78
CD44-205ENST00000352818 NECAB2Q7Z6G3 386 aa10.17□□□□□ -0.78
CD44-205ENST00000352818 GABRQQ9UN88 632 aa10.17□□□□□ -0.78
CD44-205ENST00000352818 NOP58Q9Y2X3 529 aaKnown RBP10.17□□□□□ -0.78
CD44-205ENST00000352818 COL1A1P02452 1464 aaPredicted RBP10.17□□□□□ -0.78
CD44-205ENST00000352818 BTBD19C9JJ37 291 aa10.16□□□□□ -0.78
CD44-205ENST00000352818 UBXN2AP68543 259 aa10.16□□□□□ -0.78
CD44-205ENST00000352818 CDAN1Q8IWY9 1227 aa10.16□□□□□ -0.78
CD44-205ENST00000352818 RPAP2Q8IXW5 612 aaPredicted RBP10.16□□□□□ -0.78
CD44-205ENST00000352818 ANKRD13AQ8IZ07 590 aa10.16□□□□□ -0.78
CD44-205ENST00000352818 ANKRD44Q8N8A2 993 aa10.16□□□□□ -0.78
CD44-205ENST00000352818 BIN2Q9UBW5 565 aaPredicted RBP10.16□□□□□ -0.78
CD44-205ENST00000352818 TRMT112Q9UI30 125 aaKnown RBP10.16□□□□□ -0.78
CD44-205ENST00000352818 CPA4Q9UI42 421 aa10.16□□□□□ -0.78
CD44-205ENST00000352818 FAM205AQ6ZU69 1335 aa10.15□□□□□ -0.78
CD44-205ENST00000352818 SH3TC1Q8TE82 1336 aa10.15□□□□□ -0.78
CD44-205ENST00000352818 INHAP05111 366 aa10.15□□□□□ -0.78
CD44-205ENST00000352818 ELNP15502 786 aa10.15□□□□□ -0.78
CD44-205ENST00000352818 RPS8P62241 208 aaKnown RBP10.15□□□□□ -0.78
CD44-205ENST00000352818 MDM2Q00987 491 aaPredicted RBP10.15□□□□□ -0.78
CD44-205ENST00000352818 FLIIQ13045 1269 aa10.15□□□□□ -0.78
CD44-205ENST00000352818 PROSER3Q2NL68 480 aa10.15□□□□□ -0.78
CD44-205ENST00000352818 PODNQ7Z5L7 613 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms