RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 CERS3Q8IU89 383 aa6.9□□□□□ -1.31
VCAN-203ENST00000343200 ZNF830Q96NB3 372 aaPredicted RBP6.9□□□□□ -1.31
VCAN-203ENST00000343200 NAPGQ99747 312 aaPredicted RBP6.9□□□□□ -1.31
VCAN-203ENST00000343200 ITGB1BP2Q9UKP3 347 aa6.9□□□□□ -1.31
VCAN-203ENST00000343200 S100BP04271 92 aaPredicted RBP6.9□□□□□ -1.31
VCAN-203ENST00000343200 RANBP1P43487 201 aa6.9□□□□□ -1.31
VCAN-203ENST00000343200 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.9□□□□□ -1.31
VCAN-203ENST00000343200 FER1L6Q2WGJ9 1857 aa6.9□□□□□ -1.31
VCAN-203ENST00000343200 GOLGA8QA0A0J9YX86 632 aa6.9□□□□□ -1.31
VCAN-203ENST00000343200 GOLGA8OA6NCC3 632 aa6.9□□□□□ -1.31
VCAN-203ENST00000343200 GOLGA8NF8WBI6 632 aa6.9□□□□□ -1.31
VCAN-203ENST00000343200 SH3BP5O60239 455 aa6.9□□□□□ -1.31
VCAN-203ENST00000343200 SERPINB6P35237 376 aa6.9□□□□□ -1.31
VCAN-203ENST00000343200 NBPF3Q9H094 633 aa6.9□□□□□ -1.31
VCAN-203ENST00000343200 ZNF287Q9HBT7 754 aa6.9□□□□□ -1.31
VCAN-203ENST00000343200 GUCA1BQ9UMX6 200 aa6.9□□□□□ -1.31
VCAN-203ENST00000343200 DOCK10Q96BY6 2186 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 TRPM6Q9BX84 2022 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 RIOK3O14730 519 aaKnown RBP6.89□□□□□ -1.31
VCAN-203ENST00000343200 SSFA2P28290 1259 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 MYSM1Q5VVJ2 828 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 FAM135AQ9P2D6 1515 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 ELL2O00472 640 aaPredicted RBP6.89□□□□□ -1.31
VCAN-203ENST00000343200 TTC39AQ5SRH9 613 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 ARHGAP42A6NI28 874 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 KDM1AO60341 852 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 LIG3P49916 1009 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 TYRO3Q06418 890 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 IQCDQ96DY2 449 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 IDEP14735 1019 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 EIF2S2P20042 333 aaKnown RBP6.89□□□□□ -1.31
VCAN-203ENST00000343200 CCT6BQ92526 530 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 IMPACTQ9P2X3 320 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 PAK2Q13177 524 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 GABPB2Q8TAK5 448 aaPredicted RBP6.89□□□□□ -1.31
VCAN-203ENST00000343200 RTL1A6NKG5 1358 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 GOLGA8KD6RF30 607 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 KDM4AO75164 1064 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 SYKP43405 635 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 TRIM14Q14142 442 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 ANKRD20A4Q4UJ75 823 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 ANKRD20A8PQ5CZ79 823 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 ANKRD20A2Q5SQ80 823 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 SEL1L2Q5TEA6 688 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 ANKRD20A1Q5TYW2 823 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 BTN2A1Q7KYR7 527 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 PABPN1Q86U42 306 aaKnown RBP eCLIP6.89□□□□□ -1.31
VCAN-203ENST00000343200 CTAGE3PQ8IX95 158 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 CPLX3Q8WVH0 158 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 ASCC3Q8N3C0 2202 aaKnown RBP6.89□□□□□ -1.31
VCAN-203ENST00000343200 MAGEA9P43362 315 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.89□□□□□ -1.31
VCAN-203ENST00000343200 C6orf118Q5T5N4 469 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 LRRC27Q9C0I9 530 aa6.89□□□□□ -1.31
VCAN-203ENST00000343200 ANKRD20A3Q5VUR7 823 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 LZTFL1Q9NQ48 299 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 SURF6O75683 361 aaKnown RBP6.88□□□□□ -1.31
VCAN-203ENST00000343200 CALML4Q96GE6 196 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 TRIM47Q96LD4 638 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 TBC1D32Q96NH3 1257 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 DDX21Q9NR30 783 aaKnown RBP eCLIP6.88□□□□□ -1.31
VCAN-203ENST00000343200 TSPYL4Q9UJ04 414 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 CAMSAP2Q08AD1 1489 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 KIAA2013Q8IYS2 634 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 SERPINB10P48595 397 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 MPHOSPH8Q99549 860 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 RBM27Q9P2N5 1060 aaKnown RBP6.88□□□□□ -1.31
VCAN-203ENST00000343200 LRRIQ1Q96JM4 1722 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 MAP3K7O43318 606 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 RNF40O75150 1001 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 PSMD6Q15008 389 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 ARMCX6Q7L4S7 300 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 CCDC42Q96M95 316 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 OLFM3Q96PB7 478 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 MMRN2Q9H8L6 949 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 NOB1Q9ULX3 412 aaKnown RBP6.88□□□□□ -1.31
VCAN-203ENST00000343200 ATP6V0A2Q9Y487 856 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 GCC2Q8IWJ2 1684 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 AFDNP55196 1824 aaKnown RBP6.88□□□□□ -1.31
VCAN-203ENST00000343200 BIN1O00499 593 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 KRT3P12035 628 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 SIL1Q9H173 461 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 TSKSQ9UJT2 592 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 ZNF76P36508 570 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 ATP6V1E1P36543 226 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 ITIH3Q06033 890 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 BICDL1Q6ZP65 573 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 ATG3Q9NT62 314 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 TCP11L1Q9NUJ3 509 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 SUFUQ9UMX1 484 aa6.88□□□□□ -1.31
VCAN-203ENST00000343200 FAM177BA6PVY3 158 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 KRT7P08729 469 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 POLE2P56282 527 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 NBPF10Q6P3W6 841 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 CEP70Q8NHQ1 597 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 CACTINQ8WUQ7 758 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 DOCK7Q96N67 2140 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 ANGPTL2Q9UKU9 493 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 GIPC1O14908 333 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 FLOT1O75955 427 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms