RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 GNAT2P19087 354 aa18.4■□□□□ 0.54
LIMS1-202ENST00000338045 NOL8Q76FK4 1167 aaKnown RBP18.4■□□□□ 0.54
LIMS1-202ENST00000338045 C2CD5Q86YS7 1000 aa18.4■□□□□ 0.54
LIMS1-202ENST00000338045 GPR101Q96P66 508 aaPredicted RBP18.4■□□□□ 0.54
LIMS1-202ENST00000338045 E7EWF7 191 aa18.39■□□□□ 0.54
LIMS1-202ENST00000338045 ANKRD1Q15327 319 aa18.39■□□□□ 0.54
LIMS1-202ENST00000338045 ADGRA1Q86SQ6 560 aa18.39■□□□□ 0.54
LIMS1-202ENST00000338045 ZGPATQ8N5A5 531 aaKnown RBP18.39■□□□□ 0.54
LIMS1-202ENST00000338045 WDR66Q8TBY9 1149 aa18.39■□□□□ 0.54
LIMS1-202ENST00000338045 NSUN4Q96CB9 384 aaKnown RBP18.39■□□□□ 0.54
LIMS1-202ENST00000338045 CD209Q9NNX6 404 aa18.39■□□□□ 0.54
LIMS1-202ENST00000338045 H0YIN7 160 aa18.39■□□□□ 0.53
LIMS1-202ENST00000338045 CHAF1AQ13111 956 aaPredicted RBP18.39■□□□□ 0.53
LIMS1-202ENST00000338045 ZSCAN31Q96LW9 406 aaPredicted RBP18.39■□□□□ 0.53
LIMS1-202ENST00000338045 ARMT1Q9H993 441 aa18.39■□□□□ 0.53
LIMS1-202ENST00000338045 DUOX1Q9NRD9 1551 aa18.39■□□□□ 0.53
LIMS1-202ENST00000338045 NAA16Q6N069 864 aaPredicted RBP18.38■□□□□ 0.53
LIMS1-202ENST00000338045 MAST2Q6P0Q8 1798 aa18.38■□□□□ 0.53
LIMS1-202ENST00000338045 LCORLQ8N3X6 602 aa18.38■□□□□ 0.53
LIMS1-202ENST00000338045 SH2B1Q9NRF2 756 aaPredicted RBP18.38■□□□□ 0.53
LIMS1-202ENST00000338045 GSG1L2A8MUP6 293 aa18.37■□□□□ 0.53
LIMS1-202ENST00000338045 PRDX5P30044 214 aa18.37■□□□□ 0.53
LIMS1-202ENST00000338045 MECOMQ03112 1051 aa18.37■□□□□ 0.53
LIMS1-202ENST00000338045 TOB2Q14106 344 aaPredicted RBP18.37■□□□□ 0.53
LIMS1-202ENST00000338045 SPTY2D1Q68D10 685 aaPredicted RBP18.37■□□□□ 0.53
LIMS1-202ENST00000338045 DHX32Q7L7V1 743 aaKnown RBP18.37■□□□□ 0.53
LIMS1-202ENST00000338045 RIOK1Q9BRS2 568 aaKnown RBP18.37■□□□□ 0.53
LIMS1-202ENST00000338045 EPB41L4AQ9HCS5 686 aaPredicted RBP18.37■□□□□ 0.53
LIMS1-202ENST00000338045 LAMA4Q16363 1823 aa18.37■□□□□ 0.53
LIMS1-202ENST00000338045 C10orf71Q711Q0 1435 aa18.37■□□□□ 0.53
LIMS1-202ENST00000338045 C6orf229H3BNL8 230 aa18.37■□□□□ 0.53
LIMS1-202ENST00000338045 ZNF213O14771 459 aa18.37■□□□□ 0.53
LIMS1-202ENST00000338045 EXOSC10Q01780 885 aaKnown RBP18.37■□□□□ 0.53
LIMS1-202ENST00000338045 RAB3GAP1Q15042 981 aa18.37■□□□□ 0.53
LIMS1-202ENST00000338045 NFKBIBQ15653 356 aa18.37■□□□□ 0.53
LIMS1-202ENST00000338045 IFNL3Q8IZI9 196 aa18.37■□□□□ 0.53
LIMS1-202ENST00000338045 MPNDQ8N594 471 aa18.37■□□□□ 0.53
LIMS1-202ENST00000338045 MIGA1Q8NAN2 632 aa18.37■□□□□ 0.53
LIMS1-202ENST00000338045 ZNF622Q969S3 477 aaKnown RBP eCLIP18.37■□□□□ 0.53
LIMS1-202ENST00000338045 TCEANC2Q96MN5 208 aa18.37■□□□□ 0.53
LIMS1-202ENST00000338045 MAGEB6P1A0A0J9YX57 407 aa18.36■□□□□ 0.53
LIMS1-202ENST00000338045 APPP05067 770 aa18.36■□□□□ 0.53
LIMS1-202ENST00000338045 AGXT2Q9BYV1 514 aa18.36■□□□□ 0.53
LIMS1-202ENST00000338045 TPCN1Q9ULQ1 816 aa18.36■□□□□ 0.53
LIMS1-202ENST00000338045 LARGE1O95461 756 aa18.35■□□□□ 0.53
LIMS1-202ENST00000338045 HAND2P61296 217 aa18.35■□□□□ 0.53
LIMS1-202ENST00000338045 LARP6Q9BRS8 491 aaKnown RBP18.35■□□□□ 0.53
LIMS1-202ENST00000338045 NBPF3Q9H094 633 aa18.35■□□□□ 0.53
LIMS1-202ENST00000338045 KIAA1551Q9HCM1 1747 aa18.35■□□□□ 0.53
LIMS1-202ENST00000338045 ME3Q16798 604 aa18.35■□□□□ 0.53
LIMS1-202ENST00000338045 OLFM4Q6UX06 510 aa18.35■□□□□ 0.53
LIMS1-202ENST00000338045 FBXL16Q8N461 479 aa18.35■□□□□ 0.53
LIMS1-202ENST00000338045 CNKSR1Q969H4 720 aa18.35■□□□□ 0.53
LIMS1-202ENST00000338045 SLC4A4Q9Y6R1 1079 aa18.35■□□□□ 0.53
LIMS1-202ENST00000338045 CCDC88AQ3V6T2 1871 aa18.34■□□□□ 0.53
LIMS1-202ENST00000338045 PRKAB2O43741 272 aa18.34■□□□□ 0.53
LIMS1-202ENST00000338045 CHRNA5P30532 468 aa18.34■□□□□ 0.53
LIMS1-202ENST00000338045 DPP8Q6V1X1 898 aaPredicted RBP18.34■□□□□ 0.53
LIMS1-202ENST00000338045 NACAP1Q9BZK3 213 aa18.34■□□□□ 0.53
LIMS1-202ENST00000338045 COA1Q9GZY4 146 aa18.34■□□□□ 0.53
LIMS1-202ENST00000338045 NAPBQ9H115 298 aa18.34■□□□□ 0.53
LIMS1-202ENST00000338045 TMX4Q9H1E5 349 aaPredicted RBP18.34■□□□□ 0.53
LIMS1-202ENST00000338045 JAG2Q9Y219 1238 aa18.34■□□□□ 0.53
LIMS1-202ENST00000338045 LDHBP07195 334 aaKnown RBP18.33■□□□□ 0.53
LIMS1-202ENST00000338045 NUCB2P80303 420 aa18.33■□□□□ 0.53
LIMS1-202ENST00000338045 Q6ZUG5 572 aa18.33■□□□□ 0.53
LIMS1-202ENST00000338045 SLX4Q8IY92 1834 aa18.33■□□□□ 0.52
LIMS1-202ENST00000338045 FAM205AQ6ZU69 1335 aa18.33■□□□□ 0.52
LIMS1-202ENST00000338045 ST3GAL1Q11201 340 aa18.33■□□□□ 0.52
LIMS1-202ENST00000338045 NBR1Q14596 966 aa18.33■□□□□ 0.52
LIMS1-202ENST00000338045 TBC1D10CQ8IV04 446 aa18.33■□□□□ 0.52
LIMS1-202ENST00000338045 MB21D2Q8IYB1 491 aaPredicted RBP18.33■□□□□ 0.52
LIMS1-202ENST00000338045 NCOA7Q8NI08 942 aa18.33■□□□□ 0.52
LIMS1-202ENST00000338045 C7orf43Q8WVR3 580 aa18.33■□□□□ 0.52
LIMS1-202ENST00000338045 TIAM2Q8IVF5 1701 aa18.32■□□□□ 0.52
LIMS1-202ENST00000338045 DZIP1Q86YF9 867 aaKnown RBP18.32■□□□□ 0.52
LIMS1-202ENST00000338045 ZC3H12CQ9C0D7 883 aaKnown RBP18.32■□□□□ 0.52
LIMS1-202ENST00000338045 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.32■□□□□ 0.52
LIMS1-202ENST00000338045 WDR19Q8NEZ3 1342 aa18.32■□□□□ 0.52
LIMS1-202ENST00000338045 SNED1Q8TER0 1413 aa18.31■□□□□ 0.52
LIMS1-202ENST00000338045 DYNLL1P63167 89 aaKnown RBP18.31■□□□□ 0.52
LIMS1-202ENST00000338045 GIMAP6Q6P9H5 292 aa18.31■□□□□ 0.52
LIMS1-202ENST00000338045 TBC1D22AQ8WUA7 517 aa18.31■□□□□ 0.52
LIMS1-202ENST00000338045 DLEC1Q9Y238 1755 aa18.31■□□□□ 0.52
LIMS1-202ENST00000338045 GRIK5Q16478 980 aa18.31■□□□□ 0.52
LIMS1-202ENST00000338045 TNPO1Q92973 898 aaKnown RBP18.31■□□□□ 0.52
LIMS1-202ENST00000338045 EYA3Q99504 573 aa18.31■□□□□ 0.52
LIMS1-202ENST00000338045 RTFDC1Q9BY42 306 aaPredicted RBP18.31■□□□□ 0.52
LIMS1-202ENST00000338045 MCM5P33992 734 aa18.3■□□□□ 0.52
LIMS1-202ENST00000338045 TDO2P48775 406 aa18.3■□□□□ 0.52
LIMS1-202ENST00000338045 GSTO1P78417 241 aa18.3■□□□□ 0.52
LIMS1-202ENST00000338045 ILDR1Q86SU0 546 aaPredicted RBP18.3■□□□□ 0.52
LIMS1-202ENST00000338045 CCDC83Q8IWF9 413 aa18.3■□□□□ 0.52
LIMS1-202ENST00000338045 SDR42E1Q8WUS8 393 aa18.3■□□□□ 0.52
LIMS1-202ENST00000338045 BRF1Q92994 677 aa18.3■□□□□ 0.52
LIMS1-202ENST00000338045 RIMBP2O15034 1052 aa18.29■□□□□ 0.52
LIMS1-202ENST00000338045 EVCP57679 992 aa18.29■□□□□ 0.52
LIMS1-202ENST00000338045 TRDNQ13061 729 aa18.29■□□□□ 0.52
LIMS1-202ENST00000338045 CC2D2BQ6DHV5 1058 aa18.29■□□□□ 0.52
LIMS1-202ENST00000338045 CLEC17AQ6ZS10 378 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms