RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZNF157P51786 506 aaPredicted RBP5.51□□□□□ -1.53
HMGB1-201ENST00000326004 RPS26P62854 115 aaKnown RBP5.51□□□□□ -1.53
HMGB1-201ENST00000326004 HDLBPQ00341 1268 aaKnown RBP5.51□□□□□ -1.53
HMGB1-201ENST00000326004 GSTM4Q03013 218 aa5.51□□□□□ -1.53
HMGB1-201ENST00000326004 TRIM28Q13263 835 aaKnown RBP5.51□□□□□ -1.53
HMGB1-201ENST00000326004 PRRT3Q5FWE3 981 aa5.51□□□□□ -1.53
HMGB1-201ENST00000326004 ERMP1Q7Z2K6 904 aa5.51□□□□□ -1.53
HMGB1-201ENST00000326004 TM4SF5O14894 197 aa5.5□□□□□ -1.53
HMGB1-201ENST00000326004 DEAF1O75398 565 aaPredicted RBP5.5□□□□□ -1.53
HMGB1-201ENST00000326004 CD68P34810 354 aaPredicted RBP5.5□□□□□ -1.53
HMGB1-201ENST00000326004 LIG3P49916 1009 aa5.5□□□□□ -1.53
HMGB1-201ENST00000326004 HNRNPUQ00839 825 aaKnown RBP eCLIP5.5□□□□□ -1.53
HMGB1-201ENST00000326004 LRRC14Q15048 493 aa5.5□□□□□ -1.53
HMGB1-201ENST00000326004 HP1BP3Q5SSJ5 553 aaPredicted RBP5.5□□□□□ -1.53
HMGB1-201ENST00000326004 PCNX4Q63HM2 1172 aa5.5□□□□□ -1.53
HMGB1-201ENST00000326004 SCARA3Q6AZY7 606 aa5.5□□□□□ -1.53
HMGB1-201ENST00000326004 METTL16Q86W50 562 aaKnown RBP5.5□□□□□ -1.53
HMGB1-201ENST00000326004 RELL1Q8IUW5 271 aa5.5□□□□□ -1.53
HMGB1-201ENST00000326004 SULF2Q8IWU5 870 aa5.5□□□□□ -1.53
HMGB1-201ENST00000326004 KLHDC7BQ96G42 594 aa5.5□□□□□ -1.53
HMGB1-201ENST00000326004 TRIM56Q9BRZ2 755 aaKnown RBP5.5□□□□□ -1.53
HMGB1-201ENST00000326004 CARD10Q9BWT7 1032 aa5.5□□□□□ -1.53
HMGB1-201ENST00000326004 GGT7Q9UJ14 662 aa5.5□□□□□ -1.53
HMGB1-201ENST00000326004 CNTNAP5Q8WYK1 1306 aa5.49□□□□□ -1.53
HMGB1-201ENST00000326004 DLL1O00548 723 aa5.49□□□□□ -1.53
HMGB1-201ENST00000326004 ELNP15502 786 aa5.49□□□□□ -1.53
HMGB1-201ENST00000326004 BMP6P22004 513 aa5.49□□□□□ -1.53
HMGB1-201ENST00000326004 ARNTP27540 789 aa5.49□□□□□ -1.53
HMGB1-201ENST00000326004 HGSNATQ68CP4 663 aa5.49□□□□□ -1.53
HMGB1-201ENST00000326004 TTBK2Q6IQ55 1244 aa5.49□□□□□ -1.53
HMGB1-201ENST00000326004 ALYREFQ86V81 257 aaKnown RBP5.49□□□□□ -1.53
HMGB1-201ENST00000326004 NT5DC4Q86YG4 428 aa5.49□□□□□ -1.53
HMGB1-201ENST00000326004 GALNT11Q8NCW6 608 aa5.49□□□□□ -1.53
HMGB1-201ENST00000326004 CORO1BQ9BR76 489 aa5.49□□□□□ -1.53
HMGB1-201ENST00000326004 NRSN2Q9GZP1 204 aa5.49□□□□□ -1.53
HMGB1-201ENST00000326004 CYP8B1Q9UNU6 501 aa5.49□□□□□ -1.53
HMGB1-201ENST00000326004 RNF225M0QZC1 329 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-201ENST00000326004 PAGE1O75459 146 aa5.48□□□□□ -1.53
HMGB1-201ENST00000326004 GSTP1P09211 210 aaKnown RBP5.48□□□□□ -1.53
HMGB1-201ENST00000326004 SPATA31C1P0DKV0 1188 aa5.48□□□□□ -1.53
HMGB1-201ENST00000326004 ERCC5P28715 1186 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-201ENST00000326004 GBP2P32456 591 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-201ENST00000326004 POU4F3Q15319 338 aa5.48□□□□□ -1.53
HMGB1-201ENST00000326004 FOXD4L6Q3SYB3 417 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-201ENST00000326004 IGF2-ASQ6U949 168 aa5.48□□□□□ -1.53
HMGB1-201ENST00000326004 FOXD4L3Q6VB84 417 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-201ENST00000326004 AGMOQ6ZNB7 445 aa5.48□□□□□ -1.53
HMGB1-201ENST00000326004 USP48Q86UV5 1035 aa5.48□□□□□ -1.53
HMGB1-201ENST00000326004 TMEM74Q96NL1 305 aa5.48□□□□□ -1.53
HMGB1-201ENST00000326004 TGIF2Q9GZN2 237 aa5.48□□□□□ -1.53
HMGB1-201ENST00000326004 KRT82Q9NSB4 513 aa5.48□□□□□ -1.53
HMGB1-201ENST00000326004 KBTBD4Q9NVX7 518 aa5.48□□□□□ -1.53
HMGB1-201ENST00000326004 LMNB1P20700 586 aa5.47□□□□□ -1.53
HMGB1-201ENST00000326004 NLRP12P59046 1061 aa5.47□□□□□ -1.53
HMGB1-201ENST00000326004 ZNF252P-AS1Q0IIN9 211 aa5.47□□□□□ -1.53
HMGB1-201ENST00000326004 MAP3K11Q16584 847 aa5.47□□□□□ -1.53
HMGB1-201ENST00000326004 DIEXFQ68CQ4 756 aaKnown RBP5.47□□□□□ -1.53
HMGB1-201ENST00000326004 LLGL2Q6P1M3 1020 aa5.47□□□□□ -1.53
HMGB1-201ENST00000326004 PDZD3Q86UT5 571 aa5.47□□□□□ -1.53
HMGB1-201ENST00000326004 ZNF654Q8IZM8 581 aa5.47□□□□□ -1.53
HMGB1-201ENST00000326004 PHC3Q8NDX5 983 aa5.47□□□□□ -1.53
HMGB1-201ENST00000326004 NACC1Q96RE7 527 aa5.47□□□□□ -1.53
HMGB1-201ENST00000326004 USP26Q9BXU7 913 aa5.47□□□□□ -1.53
HMGB1-201ENST00000326004 MRPL18Q9H0U6 180 aaKnown RBP5.47□□□□□ -1.53
HMGB1-201ENST00000326004 CBX8Q9HC52 389 aa5.47□□□□□ -1.53
HMGB1-201ENST00000326004 STK17AQ9UEE5 414 aa5.47□□□□□ -1.53
HMGB1-201ENST00000326004 DDX41Q9UJV9 622 aaKnown RBP5.47□□□□□ -1.53
HMGB1-201ENST00000326004 LOC100289279A0A1B0GTE1 492 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 FAM229AH3BQW9 127 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 ADAM11O75078 769 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 TRIM37O94972 964 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 MAOBP27338 520 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 LMNB2Q03252 620 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 RAD51AP2Q09MP3 1159 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 DUOXA2Q1HG44 320 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 C9orf131Q5VYM1 1079 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 CCDC84Q86UT8 332 aaPredicted RBP5.46□□□□□ -1.54
HMGB1-201ENST00000326004 TRIM42Q8IWZ5 723 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 STK35Q8TDR2 534 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 RHOVQ96L33 236 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 COPRSQ9NQ92 184 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 KCNK4Q9NYG8 393 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.46□□□□□ -1.54
HMGB1-201ENST00000326004 SYNGAP1Q96PV0 1343 aa5.46□□□□□ -1.54
HMGB1-201ENST00000326004 DDX3YO15523 660 aaKnown RBP5.45□□□□□ -1.54
HMGB1-201ENST00000326004 APBA3O96018 575 aa5.45□□□□□ -1.54
HMGB1-201ENST00000326004 COL8A1P27658 744 aa5.45□□□□□ -1.54
HMGB1-201ENST00000326004 EIF4A3P38919 411 aaKnown RBP5.45□□□□□ -1.54
HMGB1-201ENST00000326004 ZNF394Q53GI3 561 aa5.45□□□□□ -1.54
HMGB1-201ENST00000326004 TMEM130Q8N3G9 435 aa5.45□□□□□ -1.54
HMGB1-201ENST00000326004 KCNB2Q92953 911 aa5.45□□□□□ -1.54
HMGB1-201ENST00000326004 MIR1-1HGQ9H1L0 117 aa5.45□□□□□ -1.54
HMGB1-201ENST00000326004 CCSER2Q9H7U1 834 aa5.45□□□□□ -1.54
HMGB1-201ENST00000326004 KCNQ5Q9NR82 932 aa5.45□□□□□ -1.54
HMGB1-201ENST00000326004 TLR6Q9Y2C9 796 aa5.45□□□□□ -1.54
HMGB1-201ENST00000326004 MEGF11A6BM72 1044 aa5.44□□□□□ -1.54
HMGB1-201ENST00000326004 MINDY4BA8MYZ0 360 aa5.44□□□□□ -1.54
HMGB1-201ENST00000326004 C9orf172C9J069 976 aa5.44□□□□□ -1.54
HMGB1-201ENST00000326004 PF4P02776 101 aa5.44□□□□□ -1.54
HMGB1-201ENST00000326004 TFE3P19532 575 aaPredicted RBP5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms