RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PTCD1O75127 700 aaKnown RBP15.56■□□□□ 0.08
CSPG4-201ENST00000308508 ITIH3Q06033 890 aa15.56■□□□□ 0.08
CSPG4-201ENST00000308508 PNMA8AQ86V59 439 aaPredicted RBP15.56■□□□□ 0.08
CSPG4-201ENST00000308508 NCAPD3P42695 1498 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 AGTPBP1Q9UPW5 1226 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 PPFIA3O75145 1194 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 RPL13P26373 211 aaKnown RBP15.55■□□□□ 0.08
CSPG4-201ENST00000308508 ZBTB17Q13105 803 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 IGHDP01880 384 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 MAP3K21Q5TCX8 1036 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 SMC5Q8IY18 1101 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 IL16Q14005 1332 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 CALM1P0DP23 149 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 CALM2P0DP24 149 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 CALM3P0DP25 149 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 E7EVH7 732 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 IMPACTQ9P2X3 320 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 CCDC61Q9Y6R9 512 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 MTMR3Q13615 1198 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 KRT79Q5XKE5 535 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 GCKP35557 465 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 NAPAP54920 295 aa15.55■□□□□ 0.08
CSPG4-201ENST00000308508 FAM69CQ0P6D2 419 aa15.54■□□□□ 0.08
CSPG4-201ENST00000308508 MYCBPQ99417 103 aaPredicted RBP15.54■□□□□ 0.08
CSPG4-201ENST00000308508 TXNDC9O14530 226 aa15.54■□□□□ 0.08
CSPG4-201ENST00000308508 MCM7P33993 719 aa15.54■□□□□ 0.08
CSPG4-201ENST00000308508 UTP14CQ5TAP6 766 aaKnown RBP15.54■□□□□ 0.08
CSPG4-201ENST00000308508 TSHZ3Q63HK5 1081 aa15.54■□□□□ 0.08
CSPG4-201ENST00000308508 LEO1Q8WVC0 666 aaPredicted RBP15.54■□□□□ 0.08
CSPG4-201ENST00000308508 FRMD4BQ9Y2L6 1034 aa15.54■□□□□ 0.08
CSPG4-201ENST00000308508 RIOK3O14730 519 aaKnown RBP15.54■□□□□ 0.08
CSPG4-201ENST00000308508 LDHAL6AQ6ZMR3 332 aa15.54■□□□□ 0.08
CSPG4-201ENST00000308508 SPATS2Q86XZ4 545 aaKnown RBP15.54■□□□□ 0.08
CSPG4-201ENST00000308508 IQUBQ8NA54 791 aa15.54■□□□□ 0.08
CSPG4-201ENST00000308508 ZBTB9Q96C00 473 aa15.54■□□□□ 0.08
CSPG4-201ENST00000308508 ATAD2BQ9ULI0 1458 aa15.54■□□□□ 0.08
CSPG4-201ENST00000308508 MUM1Q2TAK8 710 aa15.54■□□□□ 0.08
CSPG4-201ENST00000308508 NSD2O96028 1365 aa15.53■□□□□ 0.08
CSPG4-201ENST00000308508 NCBP1Q09161 790 aaKnown RBP15.53■□□□□ 0.08
CSPG4-201ENST00000308508 CCDC65Q8IXS2 484 aa15.53■□□□□ 0.08
CSPG4-201ENST00000308508 GIPC1O14908 333 aa15.53■□□□□ 0.08
CSPG4-201ENST00000308508 DTHD1Q6ZMT9 781 aa15.53■□□□□ 0.08
CSPG4-201ENST00000308508 HVCN1Q96D96 273 aa15.53■□□□□ 0.08
CSPG4-201ENST00000308508 LUC7L3O95232 432 aaKnown RBP15.53■□□□□ 0.08
CSPG4-201ENST00000308508 ZC3H6P61129 1189 aaKnown RBP15.53■□□□□ 0.08
CSPG4-201ENST00000308508 ZGPATQ8N5A5 531 aaKnown RBP15.53■□□□□ 0.08
CSPG4-201ENST00000308508 GSDMBQ8TAX9 411 aa15.53■□□□□ 0.08
CSPG4-201ENST00000308508 NOX5Q96PH1 765 aa15.53■□□□□ 0.08
CSPG4-201ENST00000308508 STX17P56962 302 aa15.53■□□□□ 0.08
CSPG4-201ENST00000308508 PSMD6Q15008 389 aa15.53■□□□□ 0.08
CSPG4-201ENST00000308508 MIER3Q7Z3K6 550 aa15.53■□□□□ 0.08
CSPG4-201ENST00000308508 IGSF22Q8N9C0 903 aa15.53■□□□□ 0.08
CSPG4-201ENST00000308508 PAK2Q13177 524 aa15.53■□□□□ 0.08
CSPG4-201ENST00000308508 NUDT16Q96DE0 195 aaKnown RBP15.53■□□□□ 0.08
CSPG4-201ENST00000308508 SPOPO43791 374 aa15.52■□□□□ 0.08
CSPG4-201ENST00000308508 ELF2Q15723 593 aa15.52■□□□□ 0.08
CSPG4-201ENST00000308508 RILPL1Q5EBL4 403 aa15.52■□□□□ 0.08
CSPG4-201ENST00000308508 FAM204AQ9H8W3 233 aa15.52■□□□□ 0.08
CSPG4-201ENST00000308508 LRCH2Q5VUJ6 765 aa15.52■□□□□ 0.08
CSPG4-201ENST00000308508 WHAMMQ8TF30 809 aa15.52■□□□□ 0.08
CSPG4-201ENST00000308508 IGF1RP08069 1367 aa15.52■□□□□ 0.08
CSPG4-201ENST00000308508 MICAL1Q8TDZ2 1067 aa15.52■□□□□ 0.08
CSPG4-201ENST00000308508 HHATQ5VTY9 493 aa15.52■□□□□ 0.07
CSPG4-201ENST00000308508 ARHGAP45Q92619 1136 aa15.52■□□□□ 0.07
CSPG4-201ENST00000308508 LRRC2Q9BYS8 371 aa15.52■□□□□ 0.07
CSPG4-201ENST00000308508 OAS2P29728 719 aaKnown RBP15.52■□□□□ 0.07
CSPG4-201ENST00000308508 SLC8A1P32418 973 aa15.52■□□□□ 0.07
CSPG4-201ENST00000308508 RAPGEF1Q13905 1077 aa15.52■□□□□ 0.07
CSPG4-201ENST00000308508 RHPN1Q8TCX5 695 aa15.52■□□□□ 0.07
CSPG4-201ENST00000308508 EPB41P11171 864 aaKnown RBP15.52■□□□□ 0.07
CSPG4-201ENST00000308508 PDE1AP54750 535 aa15.52■□□□□ 0.07
CSPG4-201ENST00000308508 AP1ARQ63HQ0 302 aa15.52■□□□□ 0.07
CSPG4-201ENST00000308508 SRGAP1Q7Z6B7 1085 aa15.52■□□□□ 0.07
CSPG4-201ENST00000308508 SPDYE3A6NKU9 549 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 TSKSQ9UJT2 592 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 LGSNQ5TDP6 509 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 PHLDB3Q6NSJ2 640 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 CCT6AP40227 531 aaKnown RBP15.51■□□□□ 0.07
CSPG4-201ENST00000308508 FAN1Q9Y2M0 1017 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 STK10O94804 968 aaKnown RBP15.51■□□□□ 0.07
CSPG4-201ENST00000308508 MYCNP04198 464 aaPredicted RBP15.51■□□□□ 0.07
CSPG4-201ENST00000308508 CYB5RLQ6IPT4 315 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 KIFC2Q96AC6 838 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 NUP58Q9BVL2 599 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 Q9H521 79 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 SNRKQ9NRH2 765 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 TTC21BQ7Z4L5 1316 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 PPFIA4O75335 1185 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 TTLL12Q14166 644 aaPredicted RBP15.51■□□□□ 0.07
CSPG4-201ENST00000308508 DCAF17Q5H9S7 520 aaPredicted RBP15.51■□□□□ 0.07
CSPG4-201ENST00000308508 DENND2CQ68D51 928 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 DPH6Q7L8W6 267 aa15.51■□□□□ 0.07
CSPG4-201ENST00000308508 ATP6V1AP38606 617 aa15.5■□□□□ 0.07
CSPG4-201ENST00000308508 UBE3BQ7Z3V4 1068 aa15.5■□□□□ 0.07
CSPG4-201ENST00000308508 NOC4LQ9BVI4 516 aaKnown RBP15.5■□□□□ 0.07
CSPG4-201ENST00000308508 ZSCAN26Q16670 478 aa15.5■□□□□ 0.07
CSPG4-201ENST00000308508 BAIAP2L1Q9UHR4 511 aa15.5■□□□□ 0.07
CSPG4-201ENST00000308508 GNA11P29992 359 aa15.5■□□□□ 0.07
CSPG4-201ENST00000308508 AFAP1Q8N556 730 aa15.5■□□□□ 0.07
CSPG4-201ENST00000308508 RRP36Q96EU6 259 aaKnown RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms