RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 NOP56O00567 594 aaKnown RBP12.75□□□□□ -0.37
PTPN4-201ENST00000263708 HCLS1P14317 486 aaPredicted RBP12.75□□□□□ -0.37
PTPN4-201ENST00000263708 NUDT16Q96DE0 195 aaKnown RBP12.75□□□□□ -0.37
PTPN4-201ENST00000263708 ACSBG1Q96GR2 724 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 RNASE9P60153 205 aaKnown RBP12.75□□□□□ -0.37
PTPN4-201ENST00000263708 HVCN1Q96D96 273 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 PICK1Q9NRD5 415 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 POGZQ7Z3K3 1410 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 CDR2Q01850 454 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 RAB3GAP1Q15042 981 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 NBPF1Q3BBV0 1214 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 GJA3Q9Y6H8 435 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 MAGEB6P1A0A0J9YX57 407 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 RTL1A6NKG5 1358 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 GNAQP50148 359 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 TMTC4Q5T4D3 741 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 LMNTD2Q8IXW0 634 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 JDP2Q8WYK2 163 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 SMIM24O75264 130 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 NECAB1Q8N987 351 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 DBF4Q9UBU7 674 aaPredicted RBP12.74□□□□□ -0.37
PTPN4-201ENST00000263708 ATP6V1AP38606 617 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 SMTNP53814 917 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 RPS6KA2Q15349 733 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 CHMP6Q96FZ7 201 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 PPP1R12AO14974 1030 aaPredicted RBP12.74□□□□□ -0.37
PTPN4-201ENST00000263708 GNL1P36915 607 aaPredicted RBP12.74□□□□□ -0.37
PTPN4-201ENST00000263708 STRN3Q13033 797 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 AFAP1Q8N556 730 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 FAM200AQ8TCP9 573 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 RIOK1Q9BRS2 568 aaKnown RBP12.74□□□□□ -0.37
PTPN4-201ENST00000263708 SBNO2Q9Y2G9 1366 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 BAG1Q99933 345 aaPredicted RBP12.74□□□□□ -0.37
PTPN4-201ENST00000263708 RIMBP2O15034 1052 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 STX17P56962 302 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 SPAG1Q07617 926 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 SKA2Q8WVK7 121 aaPredicted RBP12.74□□□□□ -0.37
PTPN4-201ENST00000263708 NAP1L4Q99733 375 aaKnown RBP12.74□□□□□ -0.37
PTPN4-201ENST00000263708 CNPY2Q9Y2B0 182 aa12.74□□□□□ -0.37
PTPN4-201ENST00000263708 POLD1P28340 1107 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 ZSCAN23Q3MJ62 389 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 BRDTQ58F21 947 aaPredicted RBP12.73□□□□□ -0.37
PTPN4-201ENST00000263708 LIN9Q5TKA1 542 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 TMTC2Q8N394 836 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 MUM1L1Q5H9M0 696 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 UQCRFS1P1P0C7P4 283 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 IRAK4Q9NWZ3 460 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 TSTA3Q13630 321 aaPredicted RBP12.73□□□□□ -0.37
PTPN4-201ENST00000263708 TSPYL2Q9H2G4 693 aaPredicted RBP12.73□□□□□ -0.37
PTPN4-201ENST00000263708 ATAD2Q6PL18 1390 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 CAVIN2O95810 425 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 ECHDC1Q9NTX5 307 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 SLC12A2P55011 1212 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 RTL9Q8NET4 1388 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 RBBP5Q15291 538 aaKnown RBP12.73□□□□□ -0.37
PTPN4-201ENST00000263708 BSPRYQ5W0U4 402 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 CTNND2Q9UQB3 1225 aa12.73□□□□□ -0.37
PTPN4-201ENST00000263708 UBL4BQ8N7F7 174 aa12.72□□□□□ -0.37
PTPN4-201ENST00000263708 CXorf38Q8TB03 319 aa12.72□□□□□ -0.37
PTPN4-201ENST00000263708 ESYT2A0FGR8 921 aa12.72□□□□□ -0.37
PTPN4-201ENST00000263708 TMOD4Q9NZQ9 345 aa12.72□□□□□ -0.37
PTPN4-201ENST00000263708 ABL1P00519 1130 aa12.72□□□□□ -0.37
PTPN4-201ENST00000263708 RILPQ96NA2 401 aa12.72□□□□□ -0.37
PTPN4-201ENST00000263708 TEX13AQ9BXU3 409 aaPredicted RBP12.72□□□□□ -0.37
PTPN4-201ENST00000263708 JAG2Q9Y219 1238 aa12.72□□□□□ -0.37
PTPN4-201ENST00000263708 USTQ9Y2C2 406 aa12.72□□□□□ -0.37
PTPN4-201ENST00000263708 Q6ZUG5 572 aa12.72□□□□□ -0.37
PTPN4-201ENST00000263708 CDAN1Q8IWY9 1227 aa12.72□□□□□ -0.37
PTPN4-201ENST00000263708 M0QZ92 97 aa12.72□□□□□ -0.37
PTPN4-201ENST00000263708 TAOK1Q7L7X3 1001 aa12.72□□□□□ -0.37
PTPN4-201ENST00000263708 UTP14CQ5TAP6 766 aaKnown RBP12.71□□□□□ -0.37
PTPN4-201ENST00000263708 NXNQ6DKJ4 435 aa12.71□□□□□ -0.37
PTPN4-201ENST00000263708 DTHD1Q6ZMT9 781 aa12.71□□□□□ -0.37
PTPN4-201ENST00000263708 MRPL46Q9H2W6 279 aaKnown RBP12.71□□□□□ -0.37
PTPN4-201ENST00000263708 OATP04181 439 aa12.71□□□□□ -0.37
PTPN4-201ENST00000263708 C10orf67Q8IYJ2 551 aa12.71□□□□□ -0.37
PTPN4-201ENST00000263708 CARD10Q9BWT7 1032 aa12.71□□□□□ -0.37
PTPN4-201ENST00000263708 FGD6Q6ZV73 1430 aa12.71□□□□□ -0.37
PTPN4-201ENST00000263708 MAEAQ7L5Y9 396 aa12.71□□□□□ -0.37
PTPN4-201ENST00000263708 PHLDB2Q86SQ0 1253 aa12.71□□□□□ -0.37
PTPN4-201ENST00000263708 RPL13P26373 211 aaKnown RBP12.71□□□□□ -0.37
PTPN4-201ENST00000263708 PRIMPOLQ96LW4 560 aa12.71□□□□□ -0.37
PTPN4-201ENST00000263708 XAB2Q9HCS7 855 aaKnown RBP12.71□□□□□ -0.37
PTPN4-201ENST00000263708 IRX3P78415 501 aaPredicted RBP12.71□□□□□ -0.37
PTPN4-201ENST00000263708 TSNAXIP1Q2TAA8 658 aa12.71□□□□□ -0.37
PTPN4-201ENST00000263708 ZKSCAN3Q9BRR0 538 aa12.71□□□□□ -0.38
PTPN4-201ENST00000263708 PARP3Q9Y6F1 533 aa12.71□□□□□ -0.38
PTPN4-201ENST00000263708 PLEKHH2Q8IVE3 1493 aa12.71□□□□□ -0.38
PTPN4-201ENST00000263708 CALML3P27482 149 aa12.71□□□□□ -0.38
PTPN4-201ENST00000263708 MRPS27Q92552 414 aaKnown RBP12.71□□□□□ -0.38
PTPN4-201ENST00000263708 KRT19P08727 400 aa12.71□□□□□ -0.38
PTPN4-201ENST00000263708 KRT3P12035 628 aa12.71□□□□□ -0.38
PTPN4-201ENST00000263708 SF3A3Q12874 501 aaKnown RBP eCLIP12.71□□□□□ -0.38
PTPN4-201ENST00000263708 ZNF365Q70YC5 407 aa12.71□□□□□ -0.38
PTPN4-201ENST00000263708 MCM9Q9NXL9 1143 aa12.71□□□□□ -0.38
PTPN4-201ENST00000263708 CADPSQ9ULU8 1353 aa12.7□□□□□ -0.38
PTPN4-201ENST00000263708 TRIM75PA6NK02 468 aa12.7□□□□□ -0.38
PTPN4-201ENST00000263708 TNFAIP3P21580 790 aa12.7□□□□□ -0.38
PTPN4-201ENST00000263708 MAGEB6Q8N7X4 407 aa12.7□□□□□ -0.38
PTPN4-201ENST00000263708 SETSIPP0DME0 302 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms