RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 LPIN2Q92539 896 aa15.89■□□□□ 0.13
SLIRP-201ENST00000238688 DBNDD2Q9BQY9 259 aa15.89■□□□□ 0.13
SLIRP-201ENST00000238688 BCL11AQ9H165 835 aa15.89■□□□□ 0.13
SLIRP-201ENST00000238688 AKAP11Q9UKA4 1901 aa15.88■□□□□ 0.13
SLIRP-201ENST00000238688 UQCRFS1P1P0C7P4 283 aa15.88■□□□□ 0.13
SLIRP-201ENST00000238688 ATP2B4P23634 1241 aa15.88■□□□□ 0.13
SLIRP-201ENST00000238688 DLK2Q6UY11 383 aa15.88■□□□□ 0.13
SLIRP-201ENST00000238688 KBTBD3Q8NAB2 608 aa15.88■□□□□ 0.13
SLIRP-201ENST00000238688 FSD1Q9BTV5 496 aa15.88■□□□□ 0.13
SLIRP-201ENST00000238688 H7C1D1 291 aa15.87■□□□□ 0.13
SLIRP-201ENST00000238688 ST18O60284 1047 aa15.87■□□□□ 0.13
SLIRP-201ENST00000238688 RPS12P25398 132 aaKnown RBP15.87■□□□□ 0.13
SLIRP-201ENST00000238688 TTF1Q15361 905 aaPredicted RBP15.87■□□□□ 0.13
SLIRP-201ENST00000238688 TBC1D10BQ4KMP7 808 aaPredicted RBP15.87■□□□□ 0.13
SLIRP-201ENST00000238688 GORABQ5T7V8 394 aa15.87■□□□□ 0.13
SLIRP-201ENST00000238688 TMED8Q6PL24 325 aaPredicted RBP15.87■□□□□ 0.13
SLIRP-201ENST00000238688 TXNRD3Q86VQ6 643 aa15.87■□□□□ 0.13
SLIRP-201ENST00000238688 ZNF594Q96JF6 807 aaPredicted RBP15.87■□□□□ 0.13
SLIRP-201ENST00000238688 NEUROD6Q96NK8 337 aa15.87■□□□□ 0.13
SLIRP-201ENST00000238688 GMLQ99445 158 aa15.87■□□□□ 0.13
SLIRP-201ENST00000238688 BOLA2Q9H3K6 86 aa15.87■□□□□ 0.13
SLIRP-201ENST00000238688 ANO2Q9NQ90 1003 aa15.87■□□□□ 0.13
SLIRP-201ENST00000238688 TLR7Q9NYK1 1049 aaKnown RBP15.87■□□□□ 0.13
SLIRP-201ENST00000238688 FOXN1O15353 648 aa15.86■□□□□ 0.13
SLIRP-201ENST00000238688 SLC5A1P13866 664 aa15.86■□□□□ 0.13
SLIRP-201ENST00000238688 XAGE2Q96GT9 111 aa15.86■□□□□ 0.13
SLIRP-201ENST00000238688 KIF2CQ99661 725 aa15.86■□□□□ 0.13
SLIRP-201ENST00000238688 PUS3Q9BZE2 481 aaKnown RBP15.86■□□□□ 0.13
SLIRP-201ENST00000238688 ABT1Q9ULW3 272 aaKnown RBP15.86■□□□□ 0.13
SLIRP-201ENST00000238688 TLL2Q9Y6L7 1015 aa15.86■□□□□ 0.13
SLIRP-201ENST00000238688 WDR33Q9C0J8 1336 aaKnown RBP15.86■□□□□ 0.13
SLIRP-201ENST00000238688 MED23Q9ULK4 1368 aa15.86■□□□□ 0.13
SLIRP-201ENST00000238688 IFIT1P09914 478 aaKnown RBP15.85■□□□□ 0.13
SLIRP-201ENST00000238688 FGFR2P21802 821 aa15.85■□□□□ 0.13
SLIRP-201ENST00000238688 KLRK1P26718 216 aa15.85■□□□□ 0.13
SLIRP-201ENST00000238688 HSPA4P34932 840 aa15.85■□□□□ 0.13
SLIRP-201ENST00000238688 TTC39AQ5SRH9 613 aa15.85■□□□□ 0.13
SLIRP-201ENST00000238688 ZSCAN25Q6NSZ9 544 aa15.85■□□□□ 0.13
SLIRP-201ENST00000238688 CDC37L1Q7L3B6 337 aa15.85■□□□□ 0.13
SLIRP-201ENST00000238688 PAG1Q9NWQ8 432 aa15.85■□□□□ 0.13
SLIRP-201ENST00000238688 WBP1LQ9NX94 342 aa15.85■□□□□ 0.13
SLIRP-201ENST00000238688 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.85■□□□□ 0.13
SLIRP-201ENST00000238688 ASTN2O75129 1339 aaPredicted RBP15.85■□□□□ 0.13
SLIRP-201ENST00000238688 IRS2Q9Y4H2 1338 aa15.85■□□□□ 0.13
SLIRP-201ENST00000238688 DOCK2Q92608 1830 aa15.84■□□□□ 0.13
SLIRP-201ENST00000238688 CELF2O95319 508 aaKnown RBP15.84■□□□□ 0.13
SLIRP-201ENST00000238688 ARID4AP29374 1257 aaPredicted RBP15.84■□□□□ 0.13
SLIRP-201ENST00000238688 ZNF280AP59817 542 aaPredicted RBP15.84■□□□□ 0.13
SLIRP-201ENST00000238688 UBE4AQ14139 1066 aa15.84■□□□□ 0.13
SLIRP-201ENST00000238688 RNF20Q5VTR2 975 aa15.84■□□□□ 0.13
SLIRP-201ENST00000238688 RSBN1LQ6PCB5 846 aaPredicted RBP15.84■□□□□ 0.13
SLIRP-201ENST00000238688 PODNQ7Z5L7 613 aa15.84■□□□□ 0.13
SLIRP-201ENST00000238688 SAPCD2Q86UD0 394 aa15.84■□□□□ 0.13
SLIRP-201ENST00000238688 USP48Q86UV5 1035 aa15.84■□□□□ 0.13
SLIRP-201ENST00000238688 TBC1D2Q9BYX2 928 aa15.84■□□□□ 0.13
SLIRP-201ENST00000238688 HELLSQ9NRZ9 838 aa15.84■□□□□ 0.13
SLIRP-201ENST00000238688 HMG20BQ9P0W2 317 aa15.84■□□□□ 0.13
SLIRP-201ENST00000238688 TIMM10P62072 90 aa15.83■□□□□ 0.12
SLIRP-201ENST00000238688 RBM26Q5T8P6 1007 aaKnown RBP15.83■□□□□ 0.12
SLIRP-201ENST00000238688 CYP4F22Q6NT55 531 aa15.83■□□□□ 0.12
SLIRP-201ENST00000238688 CWC27Q6UX04 472 aaKnown RBP15.83■□□□□ 0.12
SLIRP-201ENST00000238688 AGBL3Q8NEM8 1001 aa15.83■□□□□ 0.12
SLIRP-201ENST00000238688 KCNB2Q92953 911 aa15.83■□□□□ 0.12
SLIRP-201ENST00000238688 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.83■□□□□ 0.12
SLIRP-201ENST00000238688 ANKRD2Q9GZV1 360 aa15.83■□□□□ 0.12
SLIRP-201ENST00000238688 LSG1Q9H089 658 aaKnown RBP15.83■□□□□ 0.12
SLIRP-201ENST00000238688 LEMD3Q9Y2U8 911 aa15.83■□□□□ 0.12
SLIRP-201ENST00000238688 CCDC171Q6TFL3 1326 aa15.83■□□□□ 0.12
SLIRP-201ENST00000238688 SNAP23O00161 211 aa15.82■□□□□ 0.12
SLIRP-201ENST00000238688 CHRNDQ07001 517 aa15.82■□□□□ 0.12
SLIRP-201ENST00000238688 KIF4BQ2VIQ3 1234 aa15.82■□□□□ 0.12
SLIRP-201ENST00000238688 DACT2Q5SW24 774 aa15.82■□□□□ 0.12
SLIRP-201ENST00000238688 CAPNS2Q96L46 248 aa15.82■□□□□ 0.12
SLIRP-201ENST00000238688 MXD3Q9BW11 206 aa15.82■□□□□ 0.12
SLIRP-201ENST00000238688 TM6SF1Q9BZW5 370 aa15.82■□□□□ 0.12
SLIRP-201ENST00000238688 ZNF804BA4D1E1 1349 aa15.82■□□□□ 0.12
SLIRP-201ENST00000238688 USP17L3A6NCW0 530 aa15.81■□□□□ 0.12
SLIRP-201ENST00000238688 USP17L4A6NCW7 530 aa15.81■□□□□ 0.12
SLIRP-201ENST00000238688 ADM5C9JUS6 153 aa15.81■□□□□ 0.12
SLIRP-201ENST00000238688 G3V3G9 751 aa15.81■□□□□ 0.12
SLIRP-201ENST00000238688 K7ELQ4 463 aaPredicted RBP15.81■□□□□ 0.12
SLIRP-201ENST00000238688 ZKSCAN1P17029 563 aaPredicted RBP15.81■□□□□ 0.12
SLIRP-201ENST00000238688 PDS5AQ29RF7 1337 aaKnown RBP15.81■□□□□ 0.12
SLIRP-201ENST00000238688 MCMDC2Q4G0Z9 681 aa15.81■□□□□ 0.12
SLIRP-201ENST00000238688 DCAF8Q5TAQ9 597 aa15.81■□□□□ 0.12
SLIRP-201ENST00000238688 USP17L1Q7RTZ2 530 aa15.81■□□□□ 0.12
SLIRP-201ENST00000238688 MAP4K1Q92918 833 aa15.81■□□□□ 0.12
SLIRP-201ENST00000238688 MYH13Q9UKX3 1938 aa15.81■□□□□ 0.12
SLIRP-201ENST00000238688 CIZ1Q9ULV3 898 aaPredicted RBP15.81■□□□□ 0.12
SLIRP-201ENST00000238688 SEMA3EO15041 775 aa15.8■□□□□ 0.12
SLIRP-201ENST00000238688 MAP4K4O95819 1239 aaPredicted RBP15.8■□□□□ 0.12
SLIRP-201ENST00000238688 TSGA10IPQ3SY00 556 aa15.8■□□□□ 0.12
SLIRP-201ENST00000238688 HHIPL1Q96JK4 782 aa15.8■□□□□ 0.12
SLIRP-201ENST00000238688 DNAJC2Q99543 621 aaKnown RBP15.8■□□□□ 0.12
SLIRP-201ENST00000238688 COA1Q9GZY4 146 aa15.8■□□□□ 0.12
SLIRP-201ENST00000238688 GNL3LQ9NVN8 582 aaKnown RBP15.8■□□□□ 0.12
SLIRP-201ENST00000238688 RNF113AO15541 343 aaKnown RBP15.79■□□□□ 0.12
SLIRP-201ENST00000238688 AOC2O75106 756 aa15.79■□□□□ 0.12
SLIRP-201ENST00000238688 TAF5LO75529 589 aa15.79■□□□□ 0.12
SLIRP-201ENST00000238688 USP17L8P0C7I0 530 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms