RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 EVCP57679 992 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 SKIDA1Q1XH10 827 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 ZSCAN29Q8IWY8 852 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 ZNF830Q96NB3 372 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 MAGEF1Q9HAY2 307 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 H0YCG3 227 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 POLR3DP05423 398 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 SKILP12757 684 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 BRDTQ58F21 947 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 NYXQ9GZU5 481 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 CDK13Q14004 1512 aaKnown RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 PDCD2Q16342 344 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 TRIM42Q8IWZ5 723 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 FSIP1Q8NA03 581 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 EXOC7Q9UPT5 735 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 RP1L1Q8IWN7 2480 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 TNNQ9UQP3 1299 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 MSH6P52701 1360 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 SOS2Q07890 1332 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 ZSCAN22P10073 491 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 TMPOP42166 694 aaKnown RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 NMIQ13287 307 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 CCT6BQ92526 530 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 MRPS27Q92552 414 aaKnown RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 BCCIPQ9P287 314 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 CDC42BPAQ5VT25 1732 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 PPFIA4O75335 1185 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 SLC4A8Q2Y0W8 1093 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 RPGRQ92834 1020 aaKnown RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 GFM2Q969S9 779 aaKnown RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 ARAP1Q96P48 1450 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 BCRP11274 1271 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 RPUSD2Q8IZ73 545 aaKnown RBP6.8□□□□□ -1.32
VPS13D-201ENST00000011700 TBC1D32Q96NH3 1257 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 SENP3Q9H4L4 574 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-201ENST00000011700 RNF10Q8N5U6 811 aaKnown RBP6.8□□□□□ -1.32
VPS13D-201ENST00000011700 CCHCR1Q8TD31 782 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 TUBB6Q9BUF5 446 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 REREQ9P2R6 1566 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 LIN9Q5TKA1 542 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 IDH1O75874 414 aaKnown RBP6.8□□□□□ -1.32
VPS13D-201ENST00000011700 PSMC4P43686 418 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 LMNB2Q03252 620 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 GSTA5Q7RTV2 222 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 SMARCC2Q8TAQ2 1214 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 ERO1AQ96HE7 468 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 TMOD3Q9NYL9 352 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-201ENST00000011700 MCM10Q7L590 875 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 KIF2CQ99661 725 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 IBTKQ9P2D0 1353 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-201ENST00000011700 GFAPP14136 432 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 TMC6Q7Z403 805 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 EPSTI1Q96J88 318 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 SIL1Q9H173 461 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 DONSONQ9NYP3 566 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 SPDYE4A6NLX3 237 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 IFIT3O14879 490 aaKnown RBP6.8□□□□□ -1.32
VPS13D-201ENST00000011700 P4HA1P13674 534 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 SEPT2Q15019 361 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 SBNO1A3KN83 1393 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 PCP11498 1178 aaKnown RBP6.8□□□□□ -1.32
VPS13D-201ENST00000011700 CFAP70Q5T0N1 1121 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 CYP26C1Q6V0L0 522 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-201ENST00000011700 ARHGAP31Q2M1Z3 1444 aa6.8□□□□□ -1.32
VPS13D-201ENST00000011700 MCM6Q14566 821 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 CCDC152Q4G0S7 254 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 TOM1L2Q6ZVM7 507 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 SDCCAG3Q96C92 435 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 MYO1AQ9UBC5 1043 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 TACC3Q9Y6A5 838 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 CCDC160A6NGH7 325 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 CLGNO14967 610 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 ERCC5P28715 1186 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-201ENST00000011700 CCDC170Q8IYT3 715 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 GRK7Q8WTQ7 553 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 MCUR1Q96AQ8 359 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 NEK1Q96PY6 1258 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 HOMER3Q9NSC5 361 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 EXOSC9Q06265 439 aaKnown RBP6.79□□□□□ -1.32
VPS13D-201ENST00000011700 PRPF4BQ13523 1007 aaKnown RBP6.79□□□□□ -1.32
VPS13D-201ENST00000011700 CCDC65Q8IXS2 484 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 SRRM1Q8IYB3 904 aaKnown RBP6.79□□□□□ -1.32
VPS13D-201ENST00000011700 HACE1Q8IYU2 909 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 SYT1P21579 422 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 SDCCAG8Q86SQ7 713 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-201ENST00000011700 BBOF1Q8ND07 529 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 PPP4R1Q8TF05 950 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 CDK19Q9BWU1 502 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 RTL1A6NKG5 1358 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 ZNF131P52739 623 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 PPP2R5AQ15172 486 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 CFAP221Q4G0U5 840 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 TCERG1LQ5VWI1 586 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 SULT6B1Q6IMI4 303 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 ANGPTL3Q9Y5C1 460 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 POTEB3A0JP26 581 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 POTEBQ6S5H4 581 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 CCDC144CPQ8IYA2 1237 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms