RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 OR9G4Q8NGQ1 327 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 OR2K2Q8NGT1 345 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 GRPEL2Q8TAA5 225 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 OSR1Q8TAX0 266 aaPredicted RBP10.43□□□□□ -0.74
TRIM28-211ENST00000597968 CASTOR1Q8WTX7 329 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 OR2D2Q9H210 308 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 VCX3BQ9H321 246 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 PEF1Q9UBV8 284 aaKnown RBP10.43□□□□□ -0.74
TRIM28-211ENST00000597968 BLOC1S6Q9UL45 172 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 KCNK7Q9Y2U2 307 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 SACSQ9NZJ4 4579 aa10.43□□□□□ -0.74
TRIM28-211ENST00000597968 TMEM272A0A1B0GTI8 110 aa10.42□□□□□ -0.74
TRIM28-211ENST00000597968 SHOXO15266 292 aa10.42□□□□□ -0.74
TRIM28-211ENST00000597968 AIREO43918 545 aa10.42□□□□□ -0.74
TRIM28-211ENST00000597968 SLC22A5O76082 557 aa10.42□□□□□ -0.74
TRIM28-211ENST00000597968 OR10A3P58181 314 aa10.42□□□□□ -0.74
TRIM28-211ENST00000597968 LINC00205P59089 165 aa10.42□□□□□ -0.74
TRIM28-211ENST00000597968 UBE2KP61086 200 aa10.42□□□□□ -0.74
TRIM28-211ENST00000597968 TBCEQ15813 527 aaPredicted RBP10.42□□□□□ -0.74
TRIM28-211ENST00000597968 VMA21Q3ZAQ7 101 aa10.42□□□□□ -0.74
TRIM28-211ENST00000597968 LCN12Q6JVE5 192 aa10.42□□□□□ -0.74
TRIM28-211ENST00000597968 OVCH2Q7RTZ1 564 aa10.42□□□□□ -0.74
TRIM28-211ENST00000597968 Q8N402 240 aa10.42□□□□□ -0.74
TRIM28-211ENST00000597968 OR10R2Q8NGX6 335 aa10.42□□□□□ -0.74
TRIM28-211ENST00000597968 A0A0B4J203 849 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 FAM223BA6NKX1 122 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 IFITM5A6NNB3 132 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 RAB27BO00194 218 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 MFNGO00587 321 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 BET1O15155 118 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 OR2A4O95047 310 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 CTXN2P0C2S0 81 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 HIST1H1DP16402 221 aaKnown RBP10.41□□□□□ -0.74
TRIM28-211ENST00000597968 DTYMKP23919 212 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 HSPA13P48723 471 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 ZNF367Q7RTV3 350 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 GTSCR1Q86UQ5 136 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 FAM223AQ8IWN6 122 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 LAX1Q8IWV1 398 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 DDB2Q92466 427 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 SNAPC3Q92966 411 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 SPATA25Q9BR10 227 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 GINS4Q9BRT9 223 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 RSRP1Q9BUV0 290 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 PALMDQ9NP74 551 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 PEMTQ9UBM1 199 aa10.41□□□□□ -0.74
TRIM28-211ENST00000597968 RBM7Q9Y580 266 aaKnown RBP10.41□□□□□ -0.74
TRIM28-211ENST00000597968 DYNC2H1Q8NCM8 4307 aaKnown RBP10.4□□□□□ -0.74
TRIM28-211ENST00000597968 SMIM30A4D0T7 59 aa10.4□□□□□ -0.74
TRIM28-211ENST00000597968 SCGNO76038 276 aa10.4□□□□□ -0.74
TRIM28-211ENST00000597968 OR9G9P0C7N8 305 aa10.4□□□□□ -0.74
TRIM28-211ENST00000597968 GSTT2P0CG29 244 aa10.4□□□□□ -0.74
TRIM28-211ENST00000597968 GSTT2BP0CG30 244 aa10.4□□□□□ -0.74
TRIM28-211ENST00000597968 DUTP33316 252 aaKnown RBP10.4□□□□□ -0.74
TRIM28-211ENST00000597968 TALDO1P37837 337 aa10.4□□□□□ -0.74
TRIM28-211ENST00000597968 IGSF11Q5DX21 431 aa10.4□□□□□ -0.74
TRIM28-211ENST00000597968 OR5T1Q8NG75 326 aa10.4□□□□□ -0.74
TRIM28-211ENST00000597968 ISOC1Q96CN7 298 aa10.4□□□□□ -0.74
TRIM28-211ENST00000597968 PHB2Q99623 299 aa10.4□□□□□ -0.74
TRIM28-211ENST00000597968 SPIN2AQ99865 258 aa10.4□□□□□ -0.74
TRIM28-211ENST00000597968 SPIN2BQ9BPZ2 258 aa10.4□□□□□ -0.74
TRIM28-211ENST00000597968 RYR2Q92736 4967 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 TRDV1A0A1B0GX56 115 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 MRPS14O60783 128 aaKnown RBP10.39□□□□□ -0.75
TRIM28-211ENST00000597968 ACTL6BO94805 426 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 MYL9P24844 172 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 PJVKQ0ZLH3 352 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 PRSS8Q16651 343 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 RPEL1Q2QD12 228 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 IL34Q6ZMJ4 242 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 SLC25A42Q86VD7 318 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 H1FOOQ8IZA3 346 aaPredicted RBP10.39□□□□□ -0.75
TRIM28-211ENST00000597968 ADAD2Q8NCV1 583 aaKnown RBP10.39□□□□□ -0.75
TRIM28-211ENST00000597968 BVESQ8NE79 360 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 MAFIPQ8WZ33 124 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 DCSTAMPQ9H295 470 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 NDUFB11Q9NX14 153 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 COA4Q9NYJ1 87 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 RAB26Q9ULW5 256 aa10.39□□□□□ -0.75
TRIM28-211ENST00000597968 A0A075B6Q4 140 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 TRBV9A0A0B4J1U6 114 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 MSGN1A6NI15 193 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 SRRM4A7MD48 611 aaKnown RBP10.38□□□□□ -0.75
TRIM28-211ENST00000597968 ATP6V1G2O95670 118 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 IFNA6P05013 189 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 GNB3P16520 340 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 RAB3BP20337 219 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 SYNJ2BPP57105 145 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 DYRK1AQ13627 763 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 ARFRP1Q13795 201 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 CDK10Q15131 360 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 C22orf42Q6IC83 251 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 NR2C2APQ86WQ0 139 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 MMD2Q8IY49 270 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 ZNF645Q8N7E2 425 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 VSTM2AQ8TAG5 236 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 SRSF12Q8WXF0 261 aaKnown RBP10.38□□□□□ -0.75
TRIM28-211ENST00000597968 KCTD12Q96CX2 325 aaKnown RBP10.38□□□□□ -0.75
TRIM28-211ENST00000597968 THAP7Q9BT49 309 aaPredicted RBP10.38□□□□□ -0.75
TRIM28-211ENST00000597968 EDA2RQ9HAV5 297 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms