RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 SLC35E4Q6ICL7 350 aa14.67□□□□□ -0.06
SYNE3-202ENST00000553340 VASH2Q86V25 355 aa14.67□□□□□ -0.06
SYNE3-202ENST00000553340 TMEM256Q8N2U0 113 aa14.67□□□□□ -0.06
SYNE3-202ENST00000553340 Q8N7P7 452 aa14.67□□□□□ -0.06
SYNE3-202ENST00000553340 SGMS2Q8NHU3 365 aa14.67□□□□□ -0.06
SYNE3-202ENST00000553340 DERL1Q9BUN8 251 aa14.67□□□□□ -0.06
SYNE3-202ENST00000553340 SNHG12Q9BXW3 62 aa14.67□□□□□ -0.06
SYNE3-202ENST00000553340 NAGKQ9UJ70 344 aa14.67□□□□□ -0.06
SYNE3-202ENST00000553340 ZXDAP98168 799 aa14.67□□□□□ -0.06
SYNE3-202ENST00000553340 FBXW9Q5XUX1 488 aa14.67□□□□□ -0.06
SYNE3-202ENST00000553340 SFRP2Q96HF1 295 aa14.67□□□□□ -0.06
SYNE3-202ENST00000553340 MS4A10Q96PG2 267 aa14.67□□□□□ -0.06
SYNE3-202ENST00000553340 DNAJC13O75165 2243 aa14.67□□□□□ -0.06
SYNE3-202ENST00000553340 MDFIC2A0A1B0GVS7 189 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 C15orf62A8K5M9 175 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 M0R143 59 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 SMPD2O60906 423 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 CD82P27701 267 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 OR10J1P30954 320 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 SOX8P57073 446 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 AESQ08117 197 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 GCSAMLQ5JQS6 135 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 HLA-CQ95604 372 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 CBLN4Q9NTU7 201 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 ELOVL5Q9NYP7 299 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 ABI3Q9P2A4 366 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 LOXL2Q9Y4K0 774 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 CER1O95813 267 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 GCH1P30793 250 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 EDDM3BP56851 147 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 GABRA6Q16445 453 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 ZNF766Q5HY98 468 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 TXNDC17Q9BRA2 123 aa14.66□□□□□ -0.06
SYNE3-202ENST00000553340 POLR3KQ9Y2Y1 108 aaPredicted RBP14.66□□□□□ -0.06
SYNE3-202ENST00000553340 MARCH11A6NNE9 402 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 WDR31Q8NA23 367 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 HSD17B10Q99714 261 aaKnown RBP14.65□□□□□ -0.06
SYNE3-202ENST00000553340 ATG101Q9BSB4 218 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 HES4Q9HCC6 221 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 KIR2DL5BA0A0G2JN68 375 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 KIR2DL5BA0A0G2JPC4 375 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 PGPEP1LA6NFU8 196 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 TMEM210A6NLX4 147 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 IFNL4K9M1U5 179 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 SELEP16581 610 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 GABRA2P47869 451 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 ALKBH6Q3KRA9 238 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 KIR2DL5AQ8N109 375 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 ZNF114Q8NC26 417 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 MAFAQ8NHW3 353 aaPredicted RBP14.65□□□□□ -0.06
SYNE3-202ENST00000553340 MRGPRDQ8TDS7 321 aa14.65□□□□□ -0.06
SYNE3-202ENST00000553340 LINC00473A8K010 186 aa14.64□□□□□ -0.07
SYNE3-202ENST00000553340 MPDU1O75352 247 aa14.64□□□□□ -0.07
SYNE3-202ENST00000553340 KITLGP21583 273 aa14.64□□□□□ -0.07
SYNE3-202ENST00000553340 QTRT1Q9BXR0 403 aaKnown RBP14.64□□□□□ -0.07
SYNE3-202ENST00000553340 A0A1B0GUS0 222 aa14.64□□□□□ -0.07
SYNE3-202ENST00000553340 RBFOX2O43251 390 aaKnown RBP eCLIP14.64□□□□□ -0.07
SYNE3-202ENST00000553340 CELA3BP08861 270 aa14.64□□□□□ -0.07
SYNE3-202ENST00000553340 PATZ1Q9HBE1 687 aaKnown RBP14.64□□□□□ -0.07
SYNE3-202ENST00000553340 ZNF705FA8MVS1 300 aaPredicted RBP14.63□□□□□ -0.07
SYNE3-202ENST00000553340 NUPR1O60356 82 aa14.63□□□□□ -0.07
SYNE3-202ENST00000553340 ZNF705DP0CH99 300 aaPredicted RBP14.63□□□□□ -0.07
SYNE3-202ENST00000553340 ZNF705BP0CI00 300 aaPredicted RBP14.63□□□□□ -0.07
SYNE3-202ENST00000553340 YPEL3P61236 119 aaPredicted RBP14.63□□□□□ -0.07
SYNE3-202ENST00000553340 SLC25A40Q8TBP6 338 aa14.63□□□□□ -0.07
SYNE3-202ENST00000553340 R3HDM4Q96D70 268 aa14.63□□□□□ -0.07
SYNE3-202ENST00000553340 IQCF6A8MYZ5 107 aa14.63□□□□□ -0.07
SYNE3-202ENST00000553340 ADMP35318 185 aa14.63□□□□□ -0.07
SYNE3-202ENST00000553340 LINC00205P59089 165 aa14.63□□□□□ -0.07
SYNE3-202ENST00000553340 RPP30P78346 268 aaKnown RBP14.63□□□□□ -0.07
SYNE3-202ENST00000553340 TCF23Q7RTU1 214 aa14.63□□□□□ -0.07
SYNE3-202ENST00000553340 CMTM2Q8TAZ6 248 aa14.63□□□□□ -0.07
SYNE3-202ENST00000553340 COQ2Q96H96 371 aa14.63□□□□□ -0.07
SYNE3-202ENST00000553340 ZDHHC11Q9H8X9 412 aa14.63□□□□□ -0.07
SYNE3-202ENST00000553340 CHODLQ9H9P2 273 aa14.63□□□□□ -0.07
SYNE3-202ENST00000553340 FREM2Q5SZK8 3169 aa14.63□□□□□ -0.07
SYNE3-202ENST00000553340 CACNA1DQ01668 2161 aa14.63□□□□□ -0.07
SYNE3-202ENST00000553340 WNT9BO14905 357 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 ARL14EPLP0DKL9 152 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 OPRK1P41145 380 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 UBE2NP61088 152 aaKnown RBP14.62□□□□□ -0.07
SYNE3-202ENST00000553340 LINC00696Q6ZRV3 163 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 ZCCHC14Q8WYQ9 949 aaKnown RBP14.62□□□□□ -0.07
SYNE3-202ENST00000553340 OBP2BQ9NPH6 170 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 GTF3C1Q12789 2109 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 TRBV20OR9-2A0A075B6H5 130 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 PSG7Q13046 419 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 PDLIM3Q53GG5 364 aaPredicted RBP14.62□□□□□ -0.07
SYNE3-202ENST00000553340 OR10G8Q8NGN5 311 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 SDSLQ96GA7 329 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 TBX15Q96SF7 602 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 ZPBPQ9BS86 351 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 PSG11Q9UQ72 335 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 IGHV3-43A0A0B4J1X8 118 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 CXorf1O96002 111 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 OR9G9P0C7N8 305 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 STAG3L2P0CL84 134 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 STAG3L3P0CL85 134 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 IGHV3-43DP0DP04 118 aa14.62□□□□□ -0.07
SYNE3-202ENST00000553340 RAB4AP20338 218 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms