RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 RNF126Q9BV68 326 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 CACNG5Q9UF02 275 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 LSM5Q9Y4Y9 91 aaKnown RBP17.07■□□□□ 0.32
VPS28-208ENST00000527797 HSPB11Q9Y547 144 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 MARCH11A6NNE9 402 aa17.06■□□□□ 0.32
VPS28-208ENST00000527797 ARPC5O15511 151 aa17.06■□□□□ 0.32
VPS28-208ENST00000527797 GAPDHP04406 335 aaKnown RBP17.06■□□□□ 0.32
VPS28-208ENST00000527797 MMP9P14780 707 aa17.06■□□□□ 0.32
VPS28-208ENST00000527797 NQO2P16083 231 aa17.06■□□□□ 0.32
VPS28-208ENST00000527797 HTR1DP28221 377 aa17.06■□□□□ 0.32
VPS28-208ENST00000527797 NKX2-1P43699 371 aaPredicted RBP17.06■□□□□ 0.32
VPS28-208ENST00000527797 ERVK-16P61578 105 aa17.06■□□□□ 0.32
VPS28-208ENST00000527797 IZUMO4Q1ZYL8 232 aa17.06■□□□□ 0.32
VPS28-208ENST00000527797 Q5PR19 223 aa17.06■□□□□ 0.32
VPS28-208ENST00000527797 Q6ZRM9 215 aa17.06■□□□□ 0.32
VPS28-208ENST00000527797 RPEQ96AT9 228 aa17.06■□□□□ 0.32
VPS28-208ENST00000527797 ARID1AO14497 2285 aa17.06■□□□□ 0.32
VPS28-208ENST00000527797 DOPEY2Q9Y3R5 2298 aa17.06■□□□□ 0.32
VPS28-208ENST00000527797 SPG11Q96JI7 2443 aa17.05■□□□□ 0.32
VPS28-208ENST00000527797 ODF3BA8MYP8 253 aa17.05■□□□□ 0.32
VPS28-208ENST00000527797 H0YIZ8 118 aa17.05■□□□□ 0.32
VPS28-208ENST00000527797 H0YJW9 148 aa17.05■□□□□ 0.32
VPS28-208ENST00000527797 ST8SIA3O43173 380 aa17.05■□□□□ 0.32
VPS28-208ENST00000527797 PITX3O75364 302 aa17.05■□□□□ 0.32
VPS28-208ENST00000527797 P0C879 139 aa17.05■□□□□ 0.32
VPS28-208ENST00000527797 HOXB4P17483 251 aaPredicted RBP17.05■□□□□ 0.32
VPS28-208ENST00000527797 LGALSLQ3ZCW2 172 aaPredicted RBP17.05■□□□□ 0.32
VPS28-208ENST00000527797 DMBX1Q8NFW5 382 aa17.05■□□□□ 0.32
VPS28-208ENST00000527797 POMT1Q9Y6A1 747 aa17.05■□□□□ 0.32
VPS28-208ENST00000527797 LEUTXA8MZ59 168 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 LY6LH3BQJ8 138 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 H7C2Y5 167 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 K7EPK0 472 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 TXNL1O43396 289 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 LYL1P12980 280 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 MC5RP33032 325 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 CEACAM3P40198 252 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 PAX8Q06710 450 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 PRSS57Q6UWY2 283 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 FAM71E2Q8N5Q1 922 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 DCUN1D4Q92564 292 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 TBX15Q96SF7 602 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 COA4Q9NYJ1 87 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 OR5AC2Q9NZP5 309 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 DPM3Q9P2X0 92 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 BOLA1Q9Y3E2 137 aa17.04■□□□□ 0.32
VPS28-208ENST00000527797 B4DSR2 109 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 RNASEK-C17orf49H0YIS7 233 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 DEDDO75618 318 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 HRASP01112 189 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 MSMBP08118 114 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 ID3Q02535 119 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 CXorf66Q5JRM2 361 aaPredicted RBP17.03■□□□□ 0.32
VPS28-208ENST00000527797 PDPNQ86YL7 162 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 PDZD9Q8IXQ8 264 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 MFFQ9GZY8 342 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 PLSCR3Q9NRY6 295 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 TNFSF18Q9UNG2 199 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 A0A096LNT2 108 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 L7N2F9 121 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 CXCL2P19875 107 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 TPTE2P1Q5T6R2 138 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 LHX4Q969G2 390 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 C1orf159Q96HA4 380 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 AIFM2Q9BRQ8 373 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.03■□□□□ 0.32
VPS28-208ENST00000527797 WASHC3Q9Y3C0 194 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 FBN2P35556 2912 aa17.03■□□□□ 0.32
VPS28-208ENST00000527797 IGHV1-3A0A0C4DH29 117 aa17.02■□□□□ 0.31
VPS28-208ENST00000527797 A0A1W2PRD5 423 aa17.02■□□□□ 0.31
VPS28-208ENST00000527797 A0A1W2PRF3 423 aa17.02■□□□□ 0.31
VPS28-208ENST00000527797 A0A1W2PRM7 423 aa17.02■□□□□ 0.31
VPS28-208ENST00000527797 IGKV1-16P04430 117 aa17.02■□□□□ 0.31
VPS28-208ENST00000527797 RAB13P51153 203 aa17.02■□□□□ 0.31
VPS28-208ENST00000527797 ARHGDIBP52566 201 aa17.02■□□□□ 0.31
VPS28-208ENST00000527797 LGALS4P56470 323 aa17.02■□□□□ 0.31
VPS28-208ENST00000527797 LOXL1Q08397 574 aaPredicted RBP17.02■□□□□ 0.31
VPS28-208ENST00000527797 SSX9Q7RTT3 188 aa17.02■□□□□ 0.31
VPS28-208ENST00000527797 MOB3BQ86TA1 216 aa17.02■□□□□ 0.31
VPS28-208ENST00000527797 INO80EQ8NBZ0 244 aaPredicted RBP17.02■□□□□ 0.31
VPS28-208ENST00000527797 OSR1Q8TAX0 266 aaPredicted RBP17.02■□□□□ 0.31
VPS28-208ENST00000527797 FLYWCH2Q96CP2 140 aaKnown RBP17.02■□□□□ 0.31
VPS28-208ENST00000527797 RCL1Q9Y2P8 373 aaKnown RBP17.02■□□□□ 0.31
VPS28-208ENST00000527797 HELZ2Q9BYK8 2649 aaKnown RBP17.02■□□□□ 0.31
VPS28-208ENST00000527797 ARHGAP32A7KAX9 2087 aa17.01■□□□□ 0.31
VPS28-208ENST00000527797 FAM90A9PA6NNJ1 464 aa17.01■□□□□ 0.31
VPS28-208ENST00000527797 WRBO00258 174 aa17.01■□□□□ 0.31
VPS28-208ENST00000527797 NUP62P37198 522 aaPredicted RBP17.01■□□□□ 0.31
VPS28-208ENST00000527797 UBE2E1P51965 193 aa17.01■□□□□ 0.31
VPS28-208ENST00000527797 MIDNQ504T8 468 aa17.01■□□□□ 0.31
VPS28-208ENST00000527797 TMEM177Q53S58 311 aa17.01■□□□□ 0.31
VPS28-208ENST00000527797 VKORC1L1Q8N0U8 176 aa17.01■□□□□ 0.31
VPS28-208ENST00000527797 RHOVQ96L33 236 aa17.01■□□□□ 0.31
VPS28-208ENST00000527797 E5RGE8 158 aa17■□□□□ 0.31
VPS28-208ENST00000527797 SHOXO15266 292 aa17■□□□□ 0.31
VPS28-208ENST00000527797 NXPH3O95157 252 aa17■□□□□ 0.31
VPS28-208ENST00000527797 C4BPBP20851 252 aa17■□□□□ 0.31
VPS28-208ENST00000527797 POLR2GP62487 172 aaKnown RBP eCLIP17■□□□□ 0.31
VPS28-208ENST00000527797 POU2AF1Q16633 256 aa17■□□□□ 0.31
VPS28-208ENST00000527797 MINOS1Q5TGZ0 78 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms