RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TANC2Q9HCD6 1990 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 HSPB1P04792 205 aaKnown RBP11.16□□□□□ -0.62
VPS54-203ENST00000409558 ZNF474Q6S9Z5 364 aaPredicted RBP11.16□□□□□ -0.62
VPS54-203ENST00000409558 ZNF561Q8N587 486 aa11.16□□□□□ -0.62
VPS54-203ENST00000409558 LOXL4Q96JB6 756 aa11.16□□□□□ -0.62
VPS54-203ENST00000409558 CABLES2Q9BTV7 478 aa11.16□□□□□ -0.62
VPS54-203ENST00000409558 C11orf1Q9H5F2 150 aa11.16□□□□□ -0.62
VPS54-203ENST00000409558 TMPRSS2O15393 492 aa11.16□□□□□ -0.62
VPS54-203ENST00000409558 H1FXQ92522 213 aaKnown RBP11.16□□□□□ -0.62
VPS54-203ENST00000409558 WASF3Q9UPY6 502 aa11.16□□□□□ -0.62
VPS54-203ENST00000409558 ANKHD1Q8IWZ3 2542 aaKnown RBP11.16□□□□□ -0.62
VPS54-203ENST00000409558 TNFSF13O75888 250 aa11.16□□□□□ -0.62
VPS54-203ENST00000409558 CHRNA7P36544 502 aa11.16□□□□□ -0.62
VPS54-203ENST00000409558 HMGN3Q15651 99 aa11.16□□□□□ -0.62
VPS54-203ENST00000409558 SEM1Q6ZVN7 128 aa11.16□□□□□ -0.62
VPS54-203ENST00000409558 WDR61Q9GZS3 305 aaKnown RBP11.16□□□□□ -0.62
VPS54-203ENST00000409558 IGKV1D-17A0A075B6S4 117 aa11.16□□□□□ -0.62
VPS54-203ENST00000409558 HOXA1P49639 335 aaPredicted RBP11.16□□□□□ -0.62
VPS54-203ENST00000409558 ZNF134P52741 427 aa11.16□□□□□ -0.62
VPS54-203ENST00000409558 A0A1W2PPQ1 181 aa11.15□□□□□ -0.62
VPS54-203ENST00000409558 LRRC30A6NM36 301 aa11.15□□□□□ -0.62
VPS54-203ENST00000409558 SLC25A6P12236 298 aa11.15□□□□□ -0.62
VPS54-203ENST00000409558 BRWD1-AS2P59051 145 aa11.15□□□□□ -0.62
VPS54-203ENST00000409558 HCFC1P51610 2035 aa11.15□□□□□ -0.62
VPS54-203ENST00000409558 TM4SF5O14894 197 aa11.15□□□□□ -0.62
VPS54-203ENST00000409558 RNF212Q495C1 297 aa11.15□□□□□ -0.62
VPS54-203ENST00000409558 MOB1BQ7L9L4 216 aa11.15□□□□□ -0.62
VPS54-203ENST00000409558 LYPD6BQ8NI32 183 aa11.15□□□□□ -0.62
VPS54-203ENST00000409558 CCL17Q92583 94 aa11.15□□□□□ -0.62
VPS54-203ENST00000409558 NAV3Q8IVL0 2385 aa11.15□□□□□ -0.62
VPS54-203ENST00000409558 IGKV3-15P01624 115 aa11.15□□□□□ -0.63
VPS54-203ENST00000409558 BCL2P10415 239 aa11.15□□□□□ -0.63
VPS54-203ENST00000409558 KLF3P57682 345 aaPredicted RBP11.15□□□□□ -0.63
VPS54-203ENST00000409558 LINC00596Q86U02 117 aa11.15□□□□□ -0.63
VPS54-203ENST00000409558 GCSAMQ8N6F7 178 aa11.15□□□□□ -0.63
VPS54-203ENST00000409558 RNF212BA8MTL3 300 aa11.14□□□□□ -0.63
VPS54-203ENST00000409558 HBE1P02100 147 aa11.14□□□□□ -0.63
VPS54-203ENST00000409558 SPNS3Q6ZMD2 512 aa11.14□□□□□ -0.63
VPS54-203ENST00000409558 SNIP1Q8TAD8 396 aaKnown RBP11.14□□□□□ -0.63
VPS54-203ENST00000409558 SNX22Q96L94 193 aa11.14□□□□□ -0.63
VPS54-203ENST00000409558 C1QTNF9BB2RNN3 333 aa11.14□□□□□ -0.63
VPS54-203ENST00000409558 AQP7O14520 342 aa11.14□□□□□ -0.63
VPS54-203ENST00000409558 LHFPL4Q7Z7J7 247 aa11.14□□□□□ -0.63
VPS54-203ENST00000409558 COMMD1Q8N668 190 aa11.14□□□□□ -0.63
VPS54-203ENST00000409558 RAB24Q969Q5 203 aa11.14□□□□□ -0.63
VPS54-203ENST00000409558 GATA2P23769 480 aaPredicted RBP11.14□□□□□ -0.63
VPS54-203ENST00000409558 EIF2S3P41091 472 aaKnown RBP11.14□□□□□ -0.63
VPS54-203ENST00000409558 ASPHD1Q5U4P2 390 aa11.14□□□□□ -0.63
VPS54-203ENST00000409558 CDPF1Q6NVV7 123 aa11.14□□□□□ -0.63
VPS54-203ENST00000409558 Q6ZS49 121 aa11.14□□□□□ -0.63
VPS54-203ENST00000409558 ELOVL1Q9BW60 279 aa11.14□□□□□ -0.63
VPS54-203ENST00000409558 MBNL3Q9NUK0 354 aaKnown RBP11.14□□□□□ -0.63
VPS54-203ENST00000409558 A0A1W2PPV4 95 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.13□□□□□ -0.63
VPS54-203ENST00000409558 RRHO14718 337 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 S100PP25815 95 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 MOB3BQ86TA1 216 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 MMP23AO75900 390 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 MIC13Q5XKP0 118 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 S1PR3Q99500 378 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 MRPL37Q9BZE1 423 aaKnown RBP11.13□□□□□ -0.63
VPS54-203ENST00000409558 DSCAMO60469 2012 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 ARHGAP32A7KAX9 2087 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 ERVK-16P61578 105 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 TNFAIP6P98066 277 aaPredicted RBP11.13□□□□□ -0.63
VPS54-203ENST00000409558 LRRC75BQ2VPJ9 315 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 PDLIM3Q53GG5 364 aaPredicted RBP11.13□□□□□ -0.63
VPS54-203ENST00000409558 LAMP3Q9UQV4 416 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 DERL1Q9BUN8 251 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 GPR61Q9BZJ8 451 aa11.13□□□□□ -0.63
VPS54-203ENST00000409558 UNKLQ9H9P5 680 aaKnown RBP11.13□□□□□ -0.63
VPS54-203ENST00000409558 LOC102723971A0A1B0GUV8 181 aa11.12□□□□□ -0.63
VPS54-203ENST00000409558 PROP1O75360 226 aa11.12□□□□□ -0.63
VPS54-203ENST00000409558 OR8U8P0C7N1 319 aa11.12□□□□□ -0.63
VPS54-203ENST00000409558 FAM3BP58499 235 aaPredicted RBP11.12□□□□□ -0.63
VPS54-203ENST00000409558 PRR30Q53SZ7 412 aaPredicted RBP11.12□□□□□ -0.63
VPS54-203ENST00000409558 C1orf229Q6ZS94 237 aaPredicted RBP11.12□□□□□ -0.63
VPS54-203ENST00000409558 OR10D4PQ8NGN7 298 aa11.12□□□□□ -0.63
VPS54-203ENST00000409558 IGHV3-72A0A0B4J1Y9 119 aa11.12□□□□□ -0.63
VPS54-203ENST00000409558 SPINK4O60575 86 aa11.12□□□□□ -0.63
VPS54-203ENST00000409558 CLN5O75503 358 aa11.12□□□□□ -0.63
VPS54-203ENST00000409558 FOXC1Q12948 553 aa11.12□□□□□ -0.63
VPS54-203ENST00000409558 MLANAQ16655 118 aa11.12□□□□□ -0.63
VPS54-203ENST00000409558 COA4Q9NYJ1 87 aa11.12□□□□□ -0.63
VPS54-203ENST00000409558 DOK5Q9P104 306 aa11.12□□□□□ -0.63
VPS54-203ENST00000409558 TMEM37Q8WXS4 190 aa11.12□□□□□ -0.63
VPS54-203ENST00000409558 LSM10Q969L4 123 aaKnown RBP11.12□□□□□ -0.63
VPS54-203ENST00000409558 TRAV20A0A0B4J274 112 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 DUXBA0A1W2PPF3 345 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 SELENOVP59797 346 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 ELOBQ15370 118 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 IL22RA2Q969J5 263 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 TMEM210A6NLX4 147 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 FABP4P15090 132 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 TMEM41BQ5BJD5 291 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 C9orf152Q5JTZ5 239 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 PRR31Q5SQ13 230 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 FAM210BQ96KR6 192 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 ZNF251Q9BRH9 671 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 PRSS44E7EML9 344 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms