RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 KHDC1LQ5JSQ8 128 aa12.23□□□□□ -0.45
TCOF1-202ENST00000377797 LSM10Q969L4 123 aaKnown RBP12.23□□□□□ -0.45
TCOF1-202ENST00000377797 TRAV20A0A0B4J274 112 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 MC5RP33032 325 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 TNFRSF9Q07011 255 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 Q56UQ5 140 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 SLC24A4Q8NFF2 622 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 TMEM140Q9NV12 185 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 THYN1Q9P016 225 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 SLC45A2Q9UMX9 530 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 CSN1S1P47710 185 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 SULT1A2P50226 295 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 RPL39P5Q59GN2 51 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 C1RLQ9NZP8 487 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 ORM2P19652 201 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 VKORC1L1Q8N0U8 176 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 ABHD12Q8N2K0 398 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 MUC22E2RYF6 1773 aaPredicted RBP12.22□□□□□ -0.45
TCOF1-202ENST00000377797 WT1P19544 449 aaPredicted RBP12.22□□□□□ -0.45
TCOF1-202ENST00000377797 SPG11Q96JI7 2443 aa12.22□□□□□ -0.45
TCOF1-202ENST00000377797 FAM90A26D6RGX4 464 aa12.21□□□□□ -0.45
TCOF1-202ENST00000377797 RND3P61587 244 aa12.21□□□□□ -0.45
TCOF1-202ENST00000377797 B2MP61769 119 aa12.21□□□□□ -0.45
TCOF1-202ENST00000377797 LY6G6FQ5SQ64 297 aa12.21□□□□□ -0.45
TCOF1-202ENST00000377797 FAM78BQ5VT40 261 aa12.21□□□□□ -0.45
TCOF1-202ENST00000377797 ZNF474Q6S9Z5 364 aaPredicted RBP12.21□□□□□ -0.45
TCOF1-202ENST00000377797 RALYQ9UKM9 306 aaKnown RBP12.21□□□□□ -0.45
TCOF1-202ENST00000377797 A0A1W2PNU3 283 aaPredicted RBP12.21□□□□□ -0.45
TCOF1-202ENST00000377797 MPZP25189 248 aa12.21□□□□□ -0.45
TCOF1-202ENST00000377797 CD1BP29016 333 aa12.21□□□□□ -0.45
TCOF1-202ENST00000377797 ZNF705AQ6ZN79 300 aaPredicted RBP12.21□□□□□ -0.45
TCOF1-202ENST00000377797 FAM90A1Q86YD7 464 aa12.21□□□□□ -0.45
TCOF1-202ENST00000377797 OR9G1Q8NH87 305 aa12.21□□□□□ -0.45
TCOF1-202ENST00000377797 SIRT7Q9NRC8 400 aa12.21□□□□□ -0.45
TCOF1-202ENST00000377797 F2RL2O00254 374 aa12.21□□□□□ -0.45
TCOF1-202ENST00000377797 ZG16O60844 167 aa12.21□□□□□ -0.45
TCOF1-202ENST00000377797 TPPP3Q9BW30 176 aa12.21□□□□□ -0.45
TCOF1-202ENST00000377797 SHANK1Q9Y566 2161 aa12.21□□□□□ -0.46
TCOF1-202ENST00000377797 PDZD11Q5EBL8 140 aa12.21□□□□□ -0.46
TCOF1-202ENST00000377797 MIOXQ9UGB7 285 aa12.21□□□□□ -0.46
TCOF1-202ENST00000377797 FREM1Q5H8C1 2179 aa12.21□□□□□ -0.46
TCOF1-202ENST00000377797 TMEM11P17152 192 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 CCDC144NLQ6NUI1 221 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 TEPPQ6URK8 271 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 ZNF497Q6ZNH5 498 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 COLCA1Q6ZS62 124 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 CLRN3Q8NCR9 226 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 ZNF581Q9P0T4 197 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 A0A0G2JNJ9 132 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 ARG1P05089 322 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 RSPO1Q2MKA7 263 aaPredicted RBP12.2□□□□□ -0.46
TCOF1-202ENST00000377797 OR4C12Q96R67 309 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 Q9UFV3 132 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 WASHC3Q9Y3C0 194 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 A0A1W2PPQ1 181 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 NPBWR1P48145 328 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 RPL8P62917 257 aaKnown RBP12.2□□□□□ -0.46
TCOF1-202ENST00000377797 CLEC2AQ6UVW9 174 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 TRAV14DV4A0A0A6YYC5 116 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 S100A8P05109 93 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 SERF2P84101 59 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 ZNF90Q03938 601 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 TMEM30BQ3MIR4 351 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 NHLRC3Q5JS37 347 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 LHFPL1Q86WI0 220 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 RPRMLQ8N4K4 120 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 OR2T6Q8NHC8 308 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 PLCE1Q9P212 2302 aa12.2□□□□□ -0.46
TCOF1-202ENST00000377797 KBTBD11-OT1A0A1B0GTJ5 212 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 SLC25A17O43808 307 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 IGFL3Q6UXB1 125 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 WDR31Q8NA23 367 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 TMUB1Q9BVT8 246 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 C17orf98A8MV24 154 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 K7ENP7 123 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 RPL27AP46776 148 aaKnown RBP12.19□□□□□ -0.46
TCOF1-202ENST00000377797 HSPE1P61604 102 aaKnown RBP12.19□□□□□ -0.46
TCOF1-202ENST00000377797 PRR27Q6MZM9 219 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 STPG2Q8N412 459 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 NPVFQ9HCQ7 196 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 IGHV1-46P01743 117 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 CT45A10P0DMU9 189 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 SSTP61278 116 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 TUSC1Q2TAM9 212 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 TOX4O94842 621 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 ZNF146Q15072 292 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 TMEM241Q24JQ0 296 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 MBNL2Q5VZF2 373 aaKnown RBP12.19□□□□□ -0.46
TCOF1-202ENST00000377797 KDF1Q8NAX2 398 aaPredicted RBP12.19□□□□□ -0.46
TCOF1-202ENST00000377797 TIMM9Q9Y5J7 89 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 CREBBPQ92793 2442 aa12.19□□□□□ -0.46
TCOF1-202ENST00000377797 PSPNO60542 156 aa12.18□□□□□ -0.46
TCOF1-202ENST00000377797 IGKV3-15P01624 115 aa12.18□□□□□ -0.46
TCOF1-202ENST00000377797 CNN1P51911 297 aaKnown RBP12.18□□□□□ -0.46
TCOF1-202ENST00000377797 OR4P4Q8NGL7 312 aa12.18□□□□□ -0.46
TCOF1-202ENST00000377797 TCF19Q9Y242 345 aa12.18□□□□□ -0.46
TCOF1-202ENST00000377797 RNF222A6NCQ9 220 aa12.18□□□□□ -0.46
TCOF1-202ENST00000377797 SRRM5B3KS81 715 aa12.18□□□□□ -0.46
TCOF1-202ENST00000377797 RASL11BQ9BPW5 248 aa12.18□□□□□ -0.46
TCOF1-202ENST00000377797 SPRY4Q9C004 299 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms