RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 MGAQ8IWI9 3026 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 CGB3P0DN86 165 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 CGB7P0DN87 165 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 PLA2G5P39877 138 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 RAB11AP62491 216 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 ADAM5Q6NVV9 412 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 ACSM6Q6P461 480 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 M0R1X1 148 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 EIF3GO75821 320 aaKnown RBP eCLIP17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 HPRT1P00492 218 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 SELLP14151 372 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 RPL39P5Q59GN2 51 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 FAM180AQ6UWF9 173 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 MRGPRGQ86SM5 289 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 CA5BP1Q8WTZ4 195 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 FAM222BQ8WU58 562 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 IFI27L2Q9H2X8 130 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 CALYQ9NYX4 217 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 OR6C3Q9NZP0 311 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 RIF1Q5UIP0 2472 aaKnown RBP17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 AKAP13Q12802 2813 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 FGF7P21781 194 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 GNB2P62879 340 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 VWC2Q2TAL6 325 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 AARDQ4LEZ3 155 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 UTF1Q5T230 341 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 GCM1Q9NP62 436 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 SLC39A9Q9NUM3 307 aa17.25■□□□□ 0.35
CCDC88B-203ENST00000359902 C5orf52A6NGY3 159 aa17.24■□□□□ 0.35
CCDC88B-203ENST00000359902 PMS2P11Q13670 270 aa17.24■□□□□ 0.35
CCDC88B-203ENST00000359902 HEPN1Q6WQI6 88 aa17.24■□□□□ 0.35
CCDC88B-203ENST00000359902 Q8TCH9 128 aa17.24■□□□□ 0.35
CCDC88B-203ENST00000359902 NCOR1P1Q9H4R4 102 aa17.24■□□□□ 0.35
CCDC88B-203ENST00000359902 A0A1W2PPE3 182 aa17.24■□□□□ 0.35
CCDC88B-203ENST00000359902 BMP5P22003 454 aa17.24■□□□□ 0.35
CCDC88B-203ENST00000359902 OR2B8PP59922 312 aa17.24■□□□□ 0.35
CCDC88B-203ENST00000359902 C17orf58Q2M2W7 97 aa17.24■□□□□ 0.35
CCDC88B-203ENST00000359902 LHX4Q969G2 390 aa17.24■□□□□ 0.35
CCDC88B-203ENST00000359902 FAM234AQ9H0X4 552 aa17.24■□□□□ 0.35
CCDC88B-203ENST00000359902 RNF7Q9UBF6 113 aa17.24■□□□□ 0.35
CCDC88B-203ENST00000359902 VAX2Q9UIW0 290 aa17.24■□□□□ 0.35
CCDC88B-203ENST00000359902 FAM90A9PA6NNJ1 464 aa17.23■□□□□ 0.35
CCDC88B-203ENST00000359902 C15orf62A8K5M9 175 aa17.23■□□□□ 0.35
CCDC88B-203ENST00000359902 IGHV1-46P01743 117 aa17.23■□□□□ 0.35
CCDC88B-203ENST00000359902 CD40P25942 277 aa17.23■□□□□ 0.35
CCDC88B-203ENST00000359902 TFF3Q07654 80 aa17.23■□□□□ 0.35
CCDC88B-203ENST00000359902 P2RX4Q99571 388 aa17.23■□□□□ 0.35
CCDC88B-203ENST00000359902 DSCAMO60469 2012 aa17.23■□□□□ 0.35
CCDC88B-203ENST00000359902 ZFHX2Q9C0A1 2572 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-203ENST00000359902 SLC31A2O15432 143 aa17.22■□□□□ 0.35
CCDC88B-203ENST00000359902 RBFOX2O43251 390 aaKnown RBP eCLIP17.22■□□□□ 0.356e-7■■■■■ 49.7
CCDC88B-203ENST00000359902 MDKP21741 143 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-203ENST00000359902 SELENOVP59797 346 aa17.22■□□□□ 0.35
CCDC88B-203ENST00000359902 TNFAIP6P98066 277 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-203ENST00000359902 C1orf229Q6ZS94 237 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-203ENST00000359902 SSX9Q7RTT3 188 aa17.22■□□□□ 0.35
CCDC88B-203ENST00000359902 IL19Q9UHD0 177 aa17.22■□□□□ 0.35
CCDC88B-203ENST00000359902 IFNA17P01571 189 aa17.22■□□□□ 0.35
CCDC88B-203ENST00000359902 DUX4L9Q6RFH8 374 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-203ENST00000359902 SDSLQ96GA7 329 aa17.22■□□□□ 0.35
CCDC88B-203ENST00000359902 NPCDR1Q9BY65 106 aa17.22■□□□□ 0.35
CCDC88B-203ENST00000359902 PRAMEF5Q5TYX0 476 aa17.21■□□□□ 0.35
CCDC88B-203ENST00000359902 VKORC1L1Q8N0U8 176 aa17.21■□□□□ 0.35
CCDC88B-203ENST00000359902 LEAP2Q969E1 77 aa17.21■□□□□ 0.35
CCDC88B-203ENST00000359902 IFNA1P01562 189 aa17.21■□□□□ 0.35
CCDC88B-203ENST00000359902 MBP02144 154 aa17.21■□□□□ 0.35
CCDC88B-203ENST00000359902 S100A6P06703 90 aa17.21■□□□□ 0.35
CCDC88B-203ENST00000359902 FFAR4Q5NUL3 377 aa17.21■□□□□ 0.35
CCDC88B-203ENST00000359902 STUMQ69YW2 141 aa17.21■□□□□ 0.35
CCDC88B-203ENST00000359902 OR10G9Q8NGN4 311 aa17.21■□□□□ 0.35
CCDC88B-203ENST00000359902 OR10G7Q8NGN6 311 aa17.21■□□□□ 0.35
CCDC88B-203ENST00000359902 SIRT7Q9NRC8 400 aa17.21■□□□□ 0.35
CCDC88B-203ENST00000359902 GAB2Q9UQC2 676 aa17.21■□□□□ 0.35
CCDC88B-203ENST00000359902 KBTBD11-OT1A0A1B0GTJ5 212 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 ITGB1BP1O14713 200 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 CYB5R3P00387 301 aaPredicted RBP17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 ELOBQ15370 118 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 CT45A1Q5HYN5 189 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 ZNF343Q6P1L6 599 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 OR4A16Q8NH70 328 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 CT45A3Q8NHU0 189 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 DDB2Q92466 427 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 S1PR3Q99500 378 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 SLC25A22Q9H936 323 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 GFOD1Q9NXC2 390 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 ICE1Q9Y2F5 2266 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 HCFC1P51610 2035 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 CTXND1A0A1B0GTU2 59 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 CXorf65A6NEN9 183 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 B4DEV8 164 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 HMGB3O15347 200 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 CCKARP32238 428 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 SPCS3P61009 180 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 RBMS3Q6XE24 437 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 C1QL4Q86Z23 238 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 LINC00469Q8N7U9 141 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 DEFB108BQ8NET1 73 aa17.2■□□□□ 0.34
CCDC88B-203ENST00000359902 UBE2CO00762 179 aa17.19■□□□□ 0.34
CCDC88B-203ENST00000359902 NBL1P41271 181 aa17.19■□□□□ 0.34
CCDC88B-203ENST00000359902 RAB7AP51149 207 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms