RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 SERGEFQ9UGK8 458 aa10.48□□□□□ -0.73
PCF11-201ENST00000298281 CEACAM8P31997 349 aaPredicted RBP10.48□□□□□ -0.73
PCF11-201ENST00000298281 LRRC3BQ96PB8 259 aa10.48□□□□□ -0.73
PCF11-201ENST00000298281 TRBV20OR9-2A0A075B6H5 130 aa10.48□□□□□ -0.73
PCF11-201ENST00000298281 CGB3P0DN86 165 aa10.48□□□□□ -0.73
PCF11-201ENST00000298281 TNFSF18Q9UNG2 199 aa10.48□□□□□ -0.73
PCF11-201ENST00000298281 EIF3GO75821 320 aaKnown RBP eCLIP10.47□□□□□ -0.73
PCF11-201ENST00000298281 VN1R4Q7Z5H5 301 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 TRAV8-6A0A0B4J262 113 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 CLDN14O95500 239 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 NAPSAO96009 420 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 TYMSP04818 313 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 TRAV8-2A0A0B4J237 113 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 CLPSL1A2RUU4 121 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 ASPDHA6ND91 283 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 ZFP36L2P47974 494 aaKnown RBP10.47□□□□□ -0.73
PCF11-201ENST00000298281 XAF1Q6GPH4 301 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 RNF122Q9H9V4 155 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 TINAGQ9UJW2 476 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 DOCK1Q14185 1865 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 ALS2Q96Q42 1657 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 MYLKQ15746 1914 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 C7orf66A4D0T2 115 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 LILRA1O75019 489 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 NDUFA3O95167 84 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 CFDP00746 253 aaPredicted RBP10.47□□□□□ -0.73
PCF11-201ENST00000298281 NPPCP23582 126 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 RNASE4P34096 147 aaKnown RBP10.47□□□□□ -0.73
PCF11-201ENST00000298281 ATG4DQ86TL0 474 aaPredicted RBP10.47□□□□□ -0.73
PCF11-201ENST00000298281 SLC6A13Q9NSD5 602 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 MRM2Q9UI43 246 aaKnown RBP10.47□□□□□ -0.73
PCF11-201ENST00000298281 RREB1Q92766 1687 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 M0R381 172 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 ATP5LO75964 103 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 CRHP06850 196 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 SMIM6P0DI80 62 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 HIKESHIQ53FT3 197 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 OR10J3Q5JRS4 329 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 VAX1Q5SQQ9 334 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 PRSS41Q7RTY9 318 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 ISOC2Q96AB3 205 aa10.47□□□□□ -0.73
PCF11-201ENST00000298281 LEPROTL1O95214 131 aa10.46□□□□□ -0.73
PCF11-201ENST00000298281 LEUTXA8MZ59 168 aa10.46□□□□□ -0.73
PCF11-201ENST00000298281 IGFBP6P24592 240 aaPredicted RBP10.46□□□□□ -0.73
PCF11-201ENST00000298281 CBLN3Q6UW01 205 aa10.46□□□□□ -0.73
PCF11-201ENST00000298281 SRSF12Q8WXF0 261 aaKnown RBP10.46□□□□□ -0.73
PCF11-201ENST00000298281 DDX60LQ5H9U9 1706 aaKnown RBP10.46□□□□□ -0.73
PCF11-201ENST00000298281 RRHO14718 337 aa10.46□□□□□ -0.73
PCF11-201ENST00000298281 DRD3P35462 400 aa10.46□□□□□ -0.73
PCF11-201ENST00000298281 IBA57Q5T440 356 aaKnown RBP10.46□□□□□ -0.73
PCF11-201ENST00000298281 OR2V2Q96R30 315 aa10.46□□□□□ -0.73
PCF11-201ENST00000298281 IFNL4K9M1U5 179 aa10.46□□□□□ -0.74
PCF11-201ENST00000298281 IGHV3-23P01764 117 aa10.46□□□□□ -0.74
PCF11-201ENST00000298281 RPL27AP46776 148 aaKnown RBP10.46□□□□□ -0.74
PCF11-201ENST00000298281 C1orf53Q5VUE5 145 aa10.46□□□□□ -0.74
PCF11-201ENST00000298281 C18orf15Q96N68 181 aa10.46□□□□□ -0.74
PCF11-201ENST00000298281 SH3BGRL3Q9H299 93 aa10.46□□□□□ -0.74
PCF11-201ENST00000298281 PLSCR2Q9NRY7 297 aa10.46□□□□□ -0.74
PCF11-201ENST00000298281 SPNP16150 400 aa10.46□□□□□ -0.74
PCF11-201ENST00000298281 PKIAP61925 76 aa10.46□□□□□ -0.74
PCF11-201ENST00000298281 JPT2Q9H910 190 aa10.46□□□□□ -0.74
PCF11-201ENST00000298281 GGTLC3B5MD39 225 aa10.46□□□□□ -0.74
PCF11-201ENST00000298281 RPS20P60866 119 aaKnown RBP10.46□□□□□ -0.74
PCF11-201ENST00000298281 PCSK4Q6UW60 755 aa10.46□□□□□ -0.74
PCF11-201ENST00000298281 HSPB9Q9BQS6 159 aa10.46□□□□□ -0.74
PCF11-201ENST00000298281 EP300Q09472 2414 aaPredicted RBP10.46□□□□□ -0.74
PCF11-201ENST00000298281 IGHV3-49A0A0A0MS15 119 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 CTXND1A0A1B0GTU2 59 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 FOXI3A8MTJ6 420 aaPredicted RBP10.45□□□□□ -0.74
PCF11-201ENST00000298281 FBXW9Q5XUX1 488 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 MSRB3Q8IXL7 192 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 LAMTOR3Q9UHA4 124 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 CYSLTR1Q9Y271 337 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 LOC105371242A0A075B767 164 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 TRGV4A0A0C4DH28 118 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 PEX7O00628 323 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 PNLIPP16233 465 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 MEF2BQ02080 365 aaPredicted RBP10.45□□□□□ -0.74
PCF11-201ENST00000298281 TMEM92Q6UXU6 159 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 GATD1Q8NB37 220 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 C17orf47Q8NEP4 570 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 OR4X2Q8NGF9 303 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 MRPL24Q96A35 216 aaKnown RBP10.45□□□□□ -0.74
PCF11-201ENST00000298281 ABHD1Q96SE0 405 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 OR2H1Q9GZK4 316 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 SEPSECSQ9HD40 501 aaKnown RBP10.45□□□□□ -0.74
PCF11-201ENST00000298281 CISD1Q9NZ45 108 aaKnown RBP10.45□□□□□ -0.74
PCF11-201ENST00000298281 GAPTQ8N292 157 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 OR4D11Q8NGI4 311 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 MRAPQ8TCY5 172 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 CHST5Q9GZS9 411 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 AMY1AP04745 511 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 SOD3P08294 240 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 SLC16A13Q7RTY0 426 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 LURAP1LQ8IV03 231 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 KCNE5Q9UJ90 142 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 TSPAN7P41732 249 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 TXNDC17Q9BRA2 123 aa10.45□□□□□ -0.74
PCF11-201ENST00000298281 IGHV3-35A0A0C4DH35 117 aa10.44□□□□□ -0.74
PCF11-201ENST00000298281 LOC390937A0A1W2PQ73 354 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms