RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 TFF3Q07654 80 aa13.77□□□□□ -0.21
LINC00554-201ENST00000564841 SLC38A11Q08AI6 406 aa13.77□□□□□ -0.21
LINC00554-201ENST00000564841 TMEM211Q6ICI0 200 aa13.77□□□□□ -0.21
LINC00554-201ENST00000564841 IL1F10Q8WWZ1 152 aa13.77□□□□□ -0.21
LINC00554-201ENST00000564841 RAB40CQ96S21 281 aa13.77□□□□□ -0.21
LINC00554-201ENST00000564841 ALKBH7Q9BT30 221 aaPredicted RBP13.77□□□□□ -0.21
LINC00554-201ENST00000564841 TNFSF11O14788 317 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 PLCXD3Q63HM9 321 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 DHRS13Q6UX07 377 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 ZNF611Q8N823 705 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 Q8N976 141 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 OR5D13Q8NGL4 314 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 SPSB1Q96BD6 273 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 NEIL1Q96FI4 390 aaPredicted RBP13.76□□□□□ -0.21
LINC00554-201ENST00000564841 ABHD14BQ96IU4 210 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 OXGR1Q96P68 337 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 PPP1R3CQ9UQK1 317 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 TRBV20OR9-2A0A075B6H5 130 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 IGHV1-45A0A0A0MS14 117 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 CD300LBA8K4G0 201 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 DIRC3C9JPN6 131 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 NXPH2O95156 264 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 IGKV1-5P01602 117 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 UBE2NP61088 152 aaKnown RBP13.76□□□□□ -0.21
LINC00554-201ENST00000564841 KCNMB1Q16558 191 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 KIAA1644Q3SXP7 199 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 DCAF12Q5T6F0 453 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 APH1AQ96BI3 265 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 PLSCR2Q9NRY7 297 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 LAMTOR2Q9Y2Q5 125 aa13.76□□□□□ -0.21
LINC00554-201ENST00000564841 SIRPB1O00241 398 aa13.75□□□□□ -0.21
LINC00554-201ENST00000564841 COX6A1P12074 109 aa13.75□□□□□ -0.21
LINC00554-201ENST00000564841 LCN2P80188 198 aa13.75□□□□□ -0.21
LINC00554-201ENST00000564841 SPINK9Q5DT21 86 aa13.75□□□□□ -0.21
LINC00554-201ENST00000564841 RPS19BP1Q86WX3 136 aaKnown RBP13.75□□□□□ -0.21
LINC00554-201ENST00000564841 TECTBQ96PL2 329 aa13.75□□□□□ -0.21
LINC00554-201ENST00000564841 GAL3ST2Q9H3Q3 398 aa13.75□□□□□ -0.21
LINC00554-201ENST00000564841 WIPI2Q9Y4P8 454 aa13.75□□□□□ -0.21
LINC00554-201ENST00000564841 DOCK10Q96BY6 2186 aa13.75□□□□□ -0.21
LINC00554-201ENST00000564841 HYPMO75409 117 aa13.75□□□□□ -0.21
LINC00554-201ENST00000564841 BCL3P20749 454 aa13.75□□□□□ -0.21
LINC00554-201ENST00000564841 H0Y980 276 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 CLDN1O95832 211 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 OTX1P32242 354 aaPredicted RBP13.74□□□□□ -0.21
LINC00554-201ENST00000564841 TGFBR3Q03167 851 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 YRDCQ86U90 279 aaKnown RBP13.74□□□□□ -0.21
LINC00554-201ENST00000564841 OR2Y1Q8NGV0 311 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 OR1L1Q8NH94 360 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 ZNF552Q9H707 407 aaPredicted RBP13.74□□□□□ -0.21
LINC00554-201ENST00000564841 CRIM1Q9NZV1 1036 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 NPIPA2E9PIF3 369 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 NPIPA3F8WFD2 350 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 MLNRO43193 412 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 CCNOP22674 350 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 CDKN1BP46527 198 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 CNN3Q15417 329 aaKnown RBP13.74□□□□□ -0.21
LINC00554-201ENST00000564841 KRTCAP3Q53RY4 240 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 ST6GALNAC3Q8NDV1 305 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 PINX1Q96BK5 328 aaKnown RBP13.74□□□□□ -0.21
LINC00554-201ENST00000564841 MRPL18Q9H0U6 180 aaKnown RBP13.74□□□□□ -0.21
LINC00554-201ENST00000564841 USF3Q68DE3 2245 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 TNRC6BQ9UPQ9 1833 aaKnown RBP13.74□□□□□ -0.21
LINC00554-201ENST00000564841 B4GALT1P15291 398 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 PMCHP20382 165 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 NTF4P34130 210 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 HBG1P69891 147 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 HBG2P69892 147 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 IGFBP7Q16270 282 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 HLA-DRB5Q30154 266 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 MCEMP1Q8IX19 187 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 STARD4Q96DR4 205 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 CHCHD2Q9Y6H1 151 aaPredicted RBP13.74□□□□□ -0.21
LINC00554-201ENST00000564841 FREM1Q5H8C1 2179 aa13.74□□□□□ -0.21
LINC00554-201ENST00000564841 TRAV38-1A0A0B4J264 116 aa13.73□□□□□ -0.21
LINC00554-201ENST00000564841 LOC102725191A0A1B0GVB3 256 aa13.73□□□□□ -0.21
LINC00554-201ENST00000564841 ITGB1BP1O14713 200 aa13.73□□□□□ -0.21
LINC00554-201ENST00000564841 HS3ST1O14792 307 aa13.73□□□□□ -0.21
LINC00554-201ENST00000564841 HNRNPA3P51991 378 aaKnown RBP13.73□□□□□ -0.21
LINC00554-201ENST00000564841 SLC35B1P78383 322 aa13.73□□□□□ -0.21
LINC00554-201ENST00000564841 SPTSSAQ969W0 71 aa13.73□□□□□ -0.21
LINC00554-201ENST00000564841 A0A0G2JMM0 328 aa13.73□□□□□ -0.21
LINC00554-201ENST00000564841 A0A1W2PPB8 328 aa13.73□□□□□ -0.21
LINC00554-201ENST00000564841 A0A1W2PRS3 328 aa13.73□□□□□ -0.21
LINC00554-201ENST00000564841 KIR3DP1A8MWS1 328 aa13.73□□□□□ -0.21
LINC00554-201ENST00000564841 CCL2P13500 99 aa13.73□□□□□ -0.21
LINC00554-201ENST00000564841 IER3P46695 156 aa13.73□□□□□ -0.21
LINC00554-201ENST00000564841 KLF3P57682 345 aaPredicted RBP13.73□□□□□ -0.21
LINC00554-201ENST00000564841 SUMO1P63165 101 aaKnown RBP13.73□□□□□ -0.21
LINC00554-201ENST00000564841 MRPL52Q86TS9 123 aaKnown RBP13.73□□□□□ -0.21
LINC00554-201ENST00000564841 OR1A1Q9P1Q5 309 aa13.73□□□□□ -0.21
LINC00554-201ENST00000564841 CTXND1A0A1B0GTU2 59 aa13.72□□□□□ -0.21
LINC00554-201ENST00000564841 CTRLP40313 264 aa13.72□□□□□ -0.21
LINC00554-201ENST00000564841 PRDX4Q13162 271 aa13.72□□□□□ -0.21
LINC00554-201ENST00000564841 UBE2V1Q13404 147 aa13.72□□□□□ -0.21
LINC00554-201ENST00000564841 LCN12Q6JVE5 192 aa13.72□□□□□ -0.21
LINC00554-201ENST00000564841 ASCL4Q6XD76 172 aa13.72□□□□□ -0.21
LINC00554-201ENST00000564841 LHFPL2Q6ZUX7 228 aa13.72□□□□□ -0.21
LINC00554-201ENST00000564841 FAM19A2Q8N3H0 131 aa13.72□□□□□ -0.21
LINC00554-201ENST00000564841 SFRP2Q96HF1 295 aa13.72□□□□□ -0.21
LINC00554-201ENST00000564841 ZNF488Q96MN9 340 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 189.2 ms