RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 IMPAD1Q9NX62 359 aa9.57□□□□□ -0.88
VPS29-211ENST00000553128 OR1A1Q9P1Q5 309 aa9.57□□□□□ -0.88
VPS29-211ENST00000553128 FAM90A7PA6NKC0 464 aa9.56□□□□□ -0.88
VPS29-211ENST00000553128 SRRM4A7MD48 611 aaKnown RBP9.56□□□□□ -0.88
VPS29-211ENST00000553128 CRTAPO75718 401 aaPredicted RBP9.56□□□□□ -0.88
VPS29-211ENST00000553128 GLAP06280 429 aa9.56□□□□□ -0.88
VPS29-211ENST00000553128 FASP25445 335 aa9.56□□□□□ -0.88
VPS29-211ENST00000553128 SNRPGP62308 76 aaKnown RBP9.56□□□□□ -0.88
VPS29-211ENST00000553128 ZNF57Q68EA5 555 aaPredicted RBP9.56□□□□□ -0.88
VPS29-211ENST00000553128 AWAT2Q6E213 333 aa9.56□□□□□ -0.88
VPS29-211ENST00000553128 PDPNQ86YL7 162 aa9.56□□□□□ -0.88
VPS29-211ENST00000553128 SVOPQ8N4V2 548 aa9.56□□□□□ -0.88
VPS29-211ENST00000553128 JAGN1Q8N5M9 183 aa9.56□□□□□ -0.88
VPS29-211ENST00000553128 TRUB1Q8WWH5 349 aaKnown RBP9.56□□□□□ -0.88
VPS29-211ENST00000553128 RNF183Q96D59 192 aa9.56□□□□□ -0.88
VPS29-211ENST00000553128 MRPL48Q96GC5 212 aaKnown RBP9.56□□□□□ -0.88
VPS29-211ENST00000553128 MED4Q9NPJ6 270 aa9.56□□□□□ -0.88
VPS29-211ENST00000553128 UBQLN2Q9UHD9 624 aa9.56□□□□□ -0.88
VPS29-211ENST00000553128 TRBV9A0A0B4J1U6 114 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 TMEM213A2RRL7 107 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 XRCC3O43542 346 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 OR9G9P0C7N8 305 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 ATP5G2Q06055 141 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 MRPL28Q13084 256 aaKnown RBP9.55□□□□□ -0.88
VPS29-211ENST00000553128 C19orf35Q6ZS72 473 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 LINC00336Q6ZUF6 198 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 FBLIM1Q8WUP2 373 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 PHB2Q99623 299 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 FAAP24Q9BTP7 215 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 ABRACLQ9P1F3 81 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 FBXL17Q9UF56 701 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 OAZ3Q9UMX2 235 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 LRRC42Q9Y546 428 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 LRP1BQ9NZR2 4599 aa9.55□□□□□ -0.88
VPS29-211ENST00000553128 A0A1W2PPK0 400 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 FAM223BA6NKX1 122 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 LGALS9O00182 355 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 IGHV3-23P01764 117 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 LIMS3P0CW19 117 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 LIMS4P0CW20 117 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 GABRB1P18505 474 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 FCGR2BP31994 310 aaPredicted RBP9.54□□□□□ -0.88
VPS29-211ENST00000553128 CEACAM6P40199 344 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 APOC4P55056 127 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 GNGT1P63211 74 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 MEDAGQ5VYS4 303 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 ZNF880Q6PDB4 577 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 BTNL8Q6UX41 500 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 C6orf201Q7Z4U5 140 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 FAM223AQ8IWN6 122 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 TMEM217Q8N7C4 229 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 UXS1Q8NBZ7 420 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 OR52I1Q8NGK6 324 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 THRSPQ92748 146 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 SLC35D1Q9NTN3 355 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 APLNQ9ULZ1 77 aa9.54□□□□□ -0.88
VPS29-211ENST00000553128 TRBV5-5A0A0J9YX44 114 aa9.53□□□□□ -0.88
VPS29-211ENST00000553128 SAC3D1A6NKF1 404 aa9.53□□□□□ -0.88
VPS29-211ENST00000553128 ITGB1BP1O14713 200 aa9.53□□□□□ -0.88
VPS29-211ENST00000553128 TUSC2O75896 110 aa9.53□□□□□ -0.88
VPS29-211ENST00000553128 OR2J3O76001 311 aa9.53□□□□□ -0.88
VPS29-211ENST00000553128 S1PR2O95136 353 aa9.53□□□□□ -0.88
VPS29-211ENST00000553128 NAPSAO96009 420 aa9.53□□□□□ -0.88
VPS29-211ENST00000553128 APOA2P02652 100 aa9.53□□□□□ -0.88
VPS29-211ENST00000553128 RPL35AP18077 110 aaKnown RBP9.53□□□□□ -0.88
VPS29-211ENST00000553128 C15orf32Q32M92 178 aa9.53□□□□□ -0.88
VPS29-211ENST00000553128 RPL22L1Q6P5R6 122 aaKnown RBP9.53□□□□□ -0.88
VPS29-211ENST00000553128 SETD6Q8TBK2 473 aa9.53□□□□□ -0.88
VPS29-211ENST00000553128 HARBI1Q96MB7 349 aa9.53□□□□□ -0.88
VPS29-211ENST00000553128 S4R3C0 116 aa9.53□□□□□ -0.88
VPS29-211ENST00000553128 M0R1X1 148 aa9.52□□□□□ -0.89
VPS29-211ENST00000553128 RTL8CO15255 209 aa9.52□□□□□ -0.89
VPS29-211ENST00000553128 GGCTO75223 188 aaKnown RBP9.52□□□□□ -0.89
VPS29-211ENST00000553128 LALBAP00709 142 aa9.52□□□□□ -0.89
VPS29-211ENST00000553128 RPS11P62280 158 aaKnown RBP eCLIP9.52□□□□□ -0.89
VPS29-211ENST00000553128 TNXAQ16473 311 aa9.52□□□□□ -0.89
VPS29-211ENST00000553128 ZIK1Q3SY52 487 aaPredicted RBP9.52□□□□□ -0.89
VPS29-211ENST00000553128 OR2G6Q5TZ20 316 aa9.52□□□□□ -0.89
VPS29-211ENST00000553128 OR10K2Q6IF99 312 aa9.52□□□□□ -0.89
VPS29-211ENST00000553128 IDO2Q6ZQW0 420 aa9.52□□□□□ -0.89
VPS29-211ENST00000553128 SRSF12Q8WXF0 261 aaKnown RBP9.52□□□□□ -0.89
VPS29-211ENST00000553128 C5orf30Q96GV9 206 aa9.52□□□□□ -0.89
VPS29-211ENST00000553128 HDHD3Q9BSH5 251 aaPredicted RBP9.52□□□□□ -0.89
VPS29-211ENST00000553128 ZNF320A2RRD8 509 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 PRSS29PA6NIE9 313 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 UBE2CO00762 179 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 MPPED1O15442 326 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 CAPGP40121 348 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 RBMS2Q15434 407 aaKnown RBP9.51□□□□□ -0.89
VPS29-211ENST00000553128 ANKRD55Q3KP44 614 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 CCDC58Q4VC31 144 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 C10orf55Q5SWW7 151 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 GPHB5Q86YW7 130 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 GVQW1Q8N7I0 195 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 STPG3Q8N7X2 389 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 OR1L6Q8NGR2 347 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 C11orf45Q8TAV5 145 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 C2CD4CQ8TF44 421 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 PTX4Q96A99 478 aa9.51□□□□□ -0.89
VPS29-211ENST00000553128 CCDC140Q96MF4 163 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 182.3 ms