RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 NECAP2Q9NVZ3 263 aa11.56□□□□□ -0.56
USP28-204ENST00000537642 TRAV41A0A0B4J266 112 aa11.55□□□□□ -0.56
USP28-204ENST00000537642 APOA2P02652 100 aa11.55□□□□□ -0.56
USP28-204ENST00000537642 CRIP2P52943 208 aaPredicted RBP11.55□□□□□ -0.56
USP28-204ENST00000537642 GNG2P59768 71 aa11.55□□□□□ -0.56
USP28-204ENST00000537642 RPS16P62249 146 aaKnown RBP11.55□□□□□ -0.56
USP28-204ENST00000537642 PITPNAQ00169 270 aa11.55□□□□□ -0.56
USP28-204ENST00000537642 PLGLAQ15195 96 aa11.55□□□□□ -0.56
USP28-204ENST00000537642 DEFB136Q30KP8 78 aa11.55□□□□□ -0.56
USP28-204ENST00000537642 TIMM50Q3ZCQ8 353 aa11.55□□□□□ -0.56
USP28-204ENST00000537642 C19orf54Q5BKX5 351 aa11.55□□□□□ -0.56
USP28-204ENST00000537642 ZNF660Q6AZW8 331 aaPredicted RBP11.55□□□□□ -0.56
USP28-204ENST00000537642 MYOZ3Q8TDC0 251 aa11.55□□□□□ -0.56
USP28-204ENST00000537642 TSNAXQ99598 290 aaKnown RBP11.55□□□□□ -0.56
USP28-204ENST00000537642 DCSTAMPQ9H295 470 aa11.55□□□□□ -0.56
USP28-204ENST00000537642 KLK15Q9H2R5 256 aa11.55□□□□□ -0.56
USP28-204ENST00000537642 VCX3AQ9NNX9 186 aa11.55□□□□□ -0.56
USP28-204ENST00000537642 SLC35D1Q9NTN3 355 aa11.55□□□□□ -0.56
USP28-204ENST00000537642 METTL1Q9UBP6 276 aaKnown RBP11.55□□□□□ -0.56
USP28-204ENST00000537642 TRIM64CA6NLI5 447 aa11.54□□□□□ -0.56
USP28-204ENST00000537642 CCL24O00175 119 aa11.54□□□□□ -0.56
USP28-204ENST00000537642 AIREO43918 545 aa11.54□□□□□ -0.56
USP28-204ENST00000537642 SPDEFO95238 335 aa11.54□□□□□ -0.56
USP28-204ENST00000537642 IGLV1-40P01703 118 aa11.54□□□□□ -0.56
USP28-204ENST00000537642 EGR2P11161 476 aaPredicted RBP11.54□□□□□ -0.56
USP28-204ENST00000537642 KIAA0141Q14154 515 aaPredicted RBP11.54□□□□□ -0.56
USP28-204ENST00000537642 REC114Q7Z4M0 266 aa11.54□□□□□ -0.56
USP28-204ENST00000537642 MINDY2Q8NBR6 621 aa11.54□□□□□ -0.56
USP28-204ENST00000537642 FLYWCH2Q96CP2 140 aaKnown RBP11.54□□□□□ -0.56
USP28-204ENST00000537642 CLCC1Q96S66 551 aa11.54□□□□□ -0.56
USP28-204ENST00000537642 TPSG1Q9NRR2 321 aa11.54□□□□□ -0.56
USP28-204ENST00000537642 AURKAIP1Q9NWT8 199 aaPredicted RBP11.54□□□□□ -0.56
USP28-204ENST00000537642 SPATA2Q9UM82 520 aa11.54□□□□□ -0.56
USP28-204ENST00000537642 RBM7Q9Y580 266 aaKnown RBP11.54□□□□□ -0.56
USP28-204ENST00000537642 TRAV18A0A075B6X5 111 aa11.53□□□□□ -0.56
USP28-204ENST00000537642 DUS4LO95620 317 aaKnown RBP11.53□□□□□ -0.56
USP28-204ENST00000537642 IGLV2-23P01705 113 aa11.53□□□□□ -0.56
USP28-204ENST00000537642 RPS19P39019 145 aaKnown RBP11.53□□□□□ -0.56
USP28-204ENST00000537642 LSM3P62310 102 aaKnown RBP11.53□□□□□ -0.56
USP28-204ENST00000537642 ECSCRQ19T08 205 aa11.53□□□□□ -0.56
USP28-204ENST00000537642 CNIH2Q6PI25 160 aa11.53□□□□□ -0.56
USP28-204ENST00000537642 C4orf3Q8WVX3 66 aa11.53□□□□□ -0.56
USP28-204ENST00000537642 NUBP2Q9Y5Y2 271 aa11.53□□□□□ -0.56
USP28-204ENST00000537642 A0A0A6YYH2 397 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 A6NJ64 397 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 J3QRK9 145 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 SLC25A17O43808 307 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 SOX15O60248 233 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 TMEM127O75204 238 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 CA2P00918 260 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 CTXN2P0C2S0 81 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 NFYAP23511 347 aaPredicted RBP11.52□□□□□ -0.57
USP28-204ENST00000537642 DUTP33316 252 aaKnown RBP11.52□□□□□ -0.57
USP28-204ENST00000537642 RAB9AP51151 201 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 TMEM65Q6PI78 240 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 ZNF562Q6V9R5 426 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 ZNF491Q8N8L2 437 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 BVESQ8NE79 360 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 ABHD5Q8WTS1 349 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 DDB2Q92466 427 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 FAM103A1Q9BTL3 118 aaKnown RBP11.52□□□□□ -0.57
USP28-204ENST00000537642 GNB4Q9HAV0 340 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 ANXA10Q9UJ72 324 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 OR2W1Q9Y3N9 320 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 A3GALT2U3KPV4 340 aa11.52□□□□□ -0.57
USP28-204ENST00000537642 TNCP24821 2201 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 A0A1W2PN81 502 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 LINC00473A8K010 186 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 ARPC1BO15143 372 aaKnown RBP11.51□□□□□ -0.57
USP28-204ENST00000537642 HLA-DQB1P01920 261 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 CRYGBP07316 175 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 CHRNA7P36544 502 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 LGALS7P47929 136 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 KRTAP10-11P60412 298 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 SSBP2P81877 361 aaPredicted RBP11.51□□□□□ -0.57
USP28-204ENST00000537642 TAGLNQ01995 201 aaKnown RBP11.51□□□□□ -0.57
USP28-204ENST00000537642 TMEM177Q53S58 311 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 PPP1R27Q86WC6 154 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 CROCCP3Q8IVE0 287 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 GVQW1Q8N7I0 195 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 UBE2E2Q96LR5 201 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 HARBI1Q96MB7 349 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 AUNIPQ9H7T9 357 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 DIABLOQ9NR28 239 aa11.51□□□□□ -0.57
USP28-204ENST00000537642 FOXA2Q9Y261 457 aaPredicted RBP11.51□□□□□ -0.57
USP28-204ENST00000537642 IGKV1D-13A0A0B4J2D9 117 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 SRRM4A7MD48 611 aaKnown RBP11.5□□□□□ -0.57
USP28-204ENST00000537642 I3L521 148 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 IGKV1-13P0DP09 117 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 PTHLHP12272 177 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 HOXD3P31249 432 aaPredicted RBP11.5□□□□□ -0.57
USP28-204ENST00000537642 LUMP51884 338 aaPredicted RBP11.5□□□□□ -0.57
USP28-204ENST00000537642 RAB25P57735 213 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 EGFEM1PQ0D2K5 195 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 TMEM267Q0VDI3 215 aaPredicted RBP11.5□□□□□ -0.57
USP28-204ENST00000537642 PJVKQ0ZLH3 352 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 FHL3Q13643 280 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 RTL8BQ17RB0 113 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 AKIRIN2Q53H80 203 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 UNQ5815/PRO19632Q6UWF5 114 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms