RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SSX8Q7RTT4 187 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 MOGAT3Q86VF5 341 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 LINC00518Q8N0U6 118 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 TPRX1Q8N7U7 411 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 R3HDM4Q96D70 268 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 RCC1LQ96I51 464 aaKnown RBP12.36□□□□□ -0.43
NUP54-217ENST00000514987 ESRP2Q9H6T0 727 aaKnown RBP12.36□□□□□ -0.43
NUP54-217ENST00000514987 SIRT7Q9NRC8 400 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 GNG13Q9P2W3 67 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 RNF7Q9UBF6 113 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 GTF3C1Q12789 2109 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 IGHV3-43A0A0B4J1X8 118 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 UBE2L5PA0A1B0GUS4 154 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 CXorf65A6NEN9 183 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 MARCH11A6NNE9 402 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 LINC00473A8K010 186 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 CEBPZOSA8MTT3 80 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 MKRN2OSH3BPM6 223 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 KLK10O43240 276 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 RBMXL2O75526 392 aaKnown RBP12.35□□□□□ -0.43
NUP54-217ENST00000514987 IGHV3-43DP0DP04 118 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 AGAP20933 346 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 NBL1P41271 181 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 ERVK-16P61578 105 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 PNRC1Q12796 327 aaPredicted RBP12.35□□□□□ -0.43
NUP54-217ENST00000514987 VWC2Q2TAL6 325 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 CYB561D1Q8N8Q1 229 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.35□□□□□ -0.43
NUP54-217ENST00000514987 CLN8Q9UBY8 286 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 IL19Q9UHD0 177 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 VAX2Q9UIW0 290 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 HEATR1Q9H583 2144 aaKnown RBP12.35□□□□□ -0.43
NUP54-217ENST00000514987 A0A1W2PPH5 198 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 A8MXE2 369 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 C17orf112F2Z3M2 114 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 SPRY3O43610 288 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 HABP2Q14520 560 aaPredicted RBP12.35□□□□□ -0.43
NUP54-217ENST00000514987 ZNF709Q8N972 641 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 OR52E5Q8NH55 327 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 ITLN1Q8WWA0 313 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 RAB39BQ96DA2 213 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 FAM234AQ9H0X4 552 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 SLC39A9Q9NUM3 307 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 ELOVL5Q9NYP7 299 aa12.35□□□□□ -0.43
NUP54-217ENST00000514987 MAP1LC3B2A6NCE7 125 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 PMS2P5A8MQ11 134 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 DEFB108AA8MXU0 73 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 LOXL3P58215 753 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 SPCS3P61009 180 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 HOXA4Q00056 320 aaPredicted RBP12.34□□□□□ -0.43
NUP54-217ENST00000514987 ZNF726P1Q15940 193 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 NCR3LG1Q68D85 454 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 FAM53AQ6NSI3 398 aaPredicted RBP12.34□□□□□ -0.43
NUP54-217ENST00000514987 LCN15Q6UWW0 184 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 PRSS33Q8NF86 280 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 NUP37Q8NFH4 326 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 Q8TCH9 128 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 SDSLQ96GA7 329 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 ZNF251Q9BRH9 671 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 DCTN5Q9BTE1 182 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 MAP1LC3BQ9GZQ8 125 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 CALYQ9NYX4 217 aa12.34□□□□□ -0.43
NUP54-217ENST00000514987 IGHV3OR15-7A0A075B7D8 119 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 CTXND1A0A1B0GTU2 59 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 M0R1X1 148 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 ZG16O60844 167 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 S100A6P06703 90 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 CGB3P0DN86 165 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 CGB7P0DN87 165 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 DAOP14920 347 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 FGF7P21781 194 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 EDDM3BP56851 147 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 TNFAIP6P98066 277 aaPredicted RBP12.33□□□□□ -0.44
NUP54-217ENST00000514987 PDLIM3Q53GG5 364 aaPredicted RBP12.33□□□□□ -0.44
NUP54-217ENST00000514987 ALKBH2Q6NS38 261 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 VHLLQ6RSH7 139 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 C1QL4Q86Z23 238 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 FAM24BQ8N5W8 94 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 OR4A16Q8NH70 328 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 ADTRPQ96IZ2 230 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 DIRC2Q96SL1 478 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 S1PR3Q99500 378 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 GGACTQ9BVM4 153 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 VSIRQ9H7M9 311 aa12.33□□□□□ -0.44
NUP54-217ENST00000514987 URB1O60287 2271 aaKnown RBP12.33□□□□□ -0.44
NUP54-217ENST00000514987 TRGV10A0A0A0MS01 117 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 A0A1W2PPE2 198 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 ZFP92A6NM28 416 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 PRRG2O14669 202 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 FCGR3BO75015 233 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 IFNA17P01571 189 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 ARG1P05089 322 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 NQO2P16083 231 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 CD40P25942 277 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 CEBPGP53567 150 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 DLK1P80370 383 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 LTC4SQ16873 150 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 PRAMEF5Q5TYX0 476 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 LHX4Q969G2 390 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 ISOC2Q96AB3 205 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms