RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZNF501Q96CX3 271 aaPredicted RBP4.53□□□□□ -1.68
SYNE1-220ENST00000471834 OXGR1Q96P68 337 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 RTL8AQ9BWD3 113 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 CLEC5AQ9NY25 188 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 PSENENQ9NZ42 101 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 APC2O95996 2303 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 SPINT2O43291 252 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 MT-ND6P03923 174 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 GLB1P16278 677 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 BMP5P22003 454 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 G0S2P27469 103 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 LTBRP36941 435 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 OR4F17Q8NGA8 305 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 CMTM2Q8TAZ6 248 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 C1orf159Q96HA4 380 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 PKIBQ9C010 78 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 NINQ8N4C6 2090 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 FAHP16930 419 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 CDKN1BP46527 198 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 ATP5J2P56134 94 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 CATR1Q13166 79 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 LRP11Q86VZ4 500 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 FAM173AQ9BQD7 235 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 PROK2Q9HC23 129 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 C5orf63A6NC05 138 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 DEFB108AA8MXU0 73 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 NRASP01111 189 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 HLA-HP01893 362 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 CRYAAP02489 173 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 PGA5P0DJD9 388 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 CCL2P13500 99 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 RNFT1Q5M7Z0 435 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 FAM58AQ8N1B3 248 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 FBXO17Q96EF6 278 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 FGF23Q9GZV9 251 aaPredicted RBP4.52□□□□□ -1.69
SYNE1-220ENST00000471834 TRBV9A0A0B4J1U6 114 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 SLC22A20A6NK97 555 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 NCBP2LA6PVI3 153 aaKnown RBP4.52□□□□□ -1.69
SYNE1-220ENST00000471834 SPRY3O43610 288 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 MPDU1O75352 247 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 RNF224P0DH78 156 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 CT45A6P0DMU7 189 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 CT45A5P0DMU8 189 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 CT45A7P0DMV0 189 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 CFHR2P36980 270 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 PTTG1IPP53801 180 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 PIGPP57054 158 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 OR5I1Q13606 314 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 CT45A1Q5HYN5 189 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF324BQ6AW86 544 aaPredicted RBP4.52□□□□□ -1.69
SYNE1-220ENST00000471834 PRR27Q6MZM9 219 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 OR52E5Q8NH55 327 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 CT45A3Q8NHU0 189 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 VN1R1Q9GZP7 353 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 PRR13Q9NZ81 148 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 IGHV2-70DA0A0C4DH43 119 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 CBR3O75828 277 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 NDUFB8O95169 186 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 IGLC2P0DOY2 106 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 IGLC3P0DOY3 106 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 B3GALT5-AS1P59052 145 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 RTL8BQ17RB0 113 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 OR2T2Q6IF00 324 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 WDR5BQ86VZ2 330 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 CYTIPO60759 359 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 SP9P0CG40 484 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 OR3A4PP47883 348 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 ZNF766Q5HY98 468 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 NUFIP2Q7Z417 695 aaKnown RBP4.52□□□□□ -1.69
SYNE1-220ENST00000471834 OR2D3Q8NGH3 330 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 PLPPR2Q96GM1 343 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 CCL19Q99731 98 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 SCNM1Q9BWG6 230 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 KMT2EQ8IZD2 1858 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 PROP1O75360 226 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 LINC00869P0C866 280 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 OPRM1P35372 400 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 PRR20EP86478 221 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 PRR20CP86479 221 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 PRR20DP86480 221 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 PRR20BP86481 221 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 PRR20AP86496 221 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 TBR1Q16650 682 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 RASL11AQ6T310 242 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 APH1AQ96BI3 265 aa4.52□□□□□ -1.69
SYNE1-220ENST00000471834 TGIF2-C20orf24A0A0A6YYL0 155 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 A0A0G2JRQ6 117 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 A0A1W2PPQ1 181 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 TDGF1P13385 188 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 NTF3P20783 257 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 SHBQ15464 509 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 TMEM41BQ5BJD5 291 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 SLC35E4Q6ICL7 350 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 C16orf54Q6UWD8 224 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 CALHM1Q8IU99 346 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 TGIF2LXQ8IUE1 241 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 ZDHHC23Q8IYP9 409 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 OR4P4Q8NGL7 312 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 WDYHV1Q96HA8 205 aa4.51□□□□□ -1.69
SYNE1-220ENST00000471834 SH3BGRL3Q9H299 93 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms