RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 OR2D2Q9H210 308 aa9.43□□□□□ -0.9
VPS52-213ENST00000461743 SCPEP1Q9HB40 452 aa9.43□□□□□ -0.9
VPS52-213ENST00000461743 COMMD3Q9UBI1 195 aa9.43□□□□□ -0.9
VPS52-213ENST00000461743 ZNF580Q9UK33 172 aa9.43□□□□□ -0.9
VPS52-213ENST00000461743 ADAM30Q9UKF2 790 aa9.43□□□□□ -0.9
VPS52-213ENST00000461743 ANAPC10Q9UM13 185 aa9.43□□□□□ -0.9
VPS52-213ENST00000461743 WASHC3Q9Y3C0 194 aa9.43□□□□□ -0.9
VPS52-213ENST00000461743 PLXNB1O43157 2135 aa9.43□□□□□ -0.9
VPS52-213ENST00000461743 IGKV1D-8A0A087WSZ0 117 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 H0YJW9 148 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 M0QZ24 198 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 SPDEFO95238 335 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 IGHG2P01859 326 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 APOA2P02652 100 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 EIF4EP06730 217 aaKnown RBP9.42□□□□□ -0.9
VPS52-213ENST00000461743 CT45A6P0DMU7 189 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 CT45A5P0DMU8 189 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 CT45A7P0DMV0 189 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 VSIG10L2P0DP72 767 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 MMDQ15546 238 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 MSMO1Q15800 293 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 C2orf68Q2NKX9 166 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 RPL39P5Q59GN2 51 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 FAM131AQ6UXB0 335 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 PDPNQ86YL7 162 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 C15orf40Q8WUR7 153 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 ADTRPQ96IZ2 230 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 IFT46Q9NQC8 304 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 SIGLEC9Q9Y336 463 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 OR2W1Q9Y3N9 320 aa9.42□□□□□ -0.9
VPS52-213ENST00000461743 HMX3A6NHT5 357 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 NCBP2LA6PVI3 153 aaKnown RBP9.41□□□□□ -0.9
VPS52-213ENST00000461743 CENPXA8MT69 81 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 SULT1C2O00338 296 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 NBR2O15453 112 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 FBXO24O75426 580 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 TUSC2O75896 110 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 NDUFA3O95167 84 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 CRYZL1O95825 349 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 HLA-DQB1P01920 261 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 OR8U9P0C7N5 309 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 PRSS3P35030 304 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 LUMP51884 338 aaPredicted RBP9.41□□□□□ -0.9
VPS52-213ENST00000461743 KRTAP10-3P60369 221 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 ACTBP60709 375 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 HNF4GQ14541 408 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 FOXRED2Q8IWF2 684 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 IQCF2Q8IXL9 164 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 ZNF645Q8N7E2 425 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 Q8N9W7 124 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 NPBQ8NG41 125 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 OR8U1Q8NH10 309 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 RASL11BQ9BPW5 248 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 PLSCR3Q9NRY6 295 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 NECAP2Q9NVZ3 263 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 KIAA1456Q9P272 454 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 RABL2AQ9UBK7 228 aaPredicted RBP9.41□□□□□ -0.9
VPS52-213ENST00000461743 RABL2BQ9UNT1 228 aa9.41□□□□□ -0.9
VPS52-213ENST00000461743 RBM7Q9Y580 266 aaKnown RBP9.41□□□□□ -0.9
VPS52-213ENST00000461743 ZNF736B4DX44 427 aaPredicted RBP9.4□□□□□ -0.9
VPS52-213ENST00000461743 M0R1X1 148 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 AP4M1O00189 453 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 HPGDSO60760 199 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 HLA-DRB1P01911 266 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 RRASP10301 218 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 NAT1P18440 290 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 ELK1P19419 428 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 M6PRP20645 277 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 THBS3P49746 956 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 TAS2R46P59540 309 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 TMEM95Q3KNT9 176 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 C9orf152Q5JTZ5 239 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 SPANXN2Q5MJ10 180 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 Q6ZS46 218 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 SLC35E3Q7Z769 313 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 CCDC190Q86UF4 302 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 OR5AP2Q8NGF4 316 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 OR4X2Q8NGF9 303 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 SNAPC3Q92966 411 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 ST6GAL2Q96JF0 529 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 GON7Q9BXV9 100 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 C6orf62Q9GZU0 229 aaPredicted RBP9.4□□□□□ -0.9
VPS52-213ENST00000461743 SDHAF2Q9NX18 166 aa9.4□□□□□ -0.9
VPS52-213ENST00000461743 TNCP24821 2201 aa9.39□□□□□ -0.91
VPS52-213ENST00000461743 H7C2Y5 167 aa9.39□□□□□ -0.91
VPS52-213ENST00000461743 PROP1O75360 226 aa9.39□□□□□ -0.91
VPS52-213ENST00000461743 RTL8BQ17RB0 113 aa9.39□□□□□ -0.91
VPS52-213ENST00000461743 C5orf64Q2M2E5 130 aa9.39□□□□□ -0.91
VPS52-213ENST00000461743 COMMD1Q8N668 190 aa9.39□□□□□ -0.91
VPS52-213ENST00000461743 GVQW1Q8N7I0 195 aa9.39□□□□□ -0.91
VPS52-213ENST00000461743 GPX8Q8TED1 209 aa9.39□□□□□ -0.91
VPS52-213ENST00000461743 TSNAXQ99598 290 aaKnown RBP9.39□□□□□ -0.91
VPS52-213ENST00000461743 RNF150Q9ULK6 438 aa9.39□□□□□ -0.91
VPS52-213ENST00000461743 LOC105371267A0A1B0GV96 52 aa9.38□□□□□ -0.91
VPS52-213ENST00000461743 PSMB11A5LHX3 300 aa9.38□□□□□ -0.91
VPS52-213ENST00000461743 PPYP01298 95 aa9.38□□□□□ -0.91
VPS52-213ENST00000461743 OPN1MWP04001 364 aa9.38□□□□□ -0.91
VPS52-213ENST00000461743 OPN1MW2P0DN77 364 aa9.38□□□□□ -0.91
VPS52-213ENST00000461743 OPN1MW3P0DN78 364 aa9.38□□□□□ -0.91
VPS52-213ENST00000461743 OR5H8P0DN80 308 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms