RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 FAM122AQ96E09 287 aa11.21□□□□□ -0.62
VPS54-203ENST00000409558 DFFBO76075 338 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 IFNA4P05014 189 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 CXCL1P09341 107 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 CD200P41217 278 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 C10orf91Q5T1B1 145 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 BHLHA15Q7RTS1 189 aaPredicted RBP11.2□□□□□ -0.62
VPS54-203ENST00000409558 ZADH2Q8N4Q0 377 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 SSMEM1Q8WWF3 244 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 RAB40CQ96S21 281 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 CLCF1Q9UBD9 225 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 TRAV3A0A0B4J244 114 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 IGHV3-48P01763 117 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 RAB5CP51148 216 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 ABHD12Q8N2K0 398 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 OR4F5Q8NH21 305 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 DTD1Q8TEA8 209 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 OR4F4Q96R69 305 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 CXXC4Q9H2H0 198 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 SRP19P09132 144 aaKnown RBP11.2□□□□□ -0.62
VPS54-203ENST00000409558 REG1BP48304 166 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 NKX6-1P78426 367 aaPredicted RBP11.2□□□□□ -0.62
VPS54-203ENST00000409558 INO80CQ6PI98 192 aaPredicted RBP11.2□□□□□ -0.62
VPS54-203ENST00000409558 C11orf53Q8IXP5 236 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 ZNF525Q8N782 197 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 ZNF709Q8N972 641 aa11.2□□□□□ -0.62
VPS54-203ENST00000409558 QTRT1Q9BXR0 403 aaKnown RBP11.2□□□□□ -0.62
VPS54-203ENST00000409558 SPINT2O43291 252 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 IGKV1D-33P01593 117 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 IGKV1-33P01594 117 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 NDUFB7P17568 137 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 TNFRSF9Q07011 255 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 ZNF726P1Q15940 193 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 SMIM21Q3B7S5 101 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 FFAR4Q5NUL3 377 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 MUCL1Q96DR8 90 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 SCRT1Q9BWW7 348 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 TRBV23-1A0A0A0MS06 115 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 GALR2O43603 387 aaPredicted RBP11.19□□□□□ -0.62
VPS54-203ENST00000409558 APELAP0DMC3 54 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 CATR1Q13166 79 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 ACSF3Q4G176 576 aaPredicted RBP11.19□□□□□ -0.62
VPS54-203ENST00000409558 STARD4Q96DR4 205 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 ARV1Q9H2C2 271 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 SLC31A2O15432 143 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 SS18L1O75177 396 aaPredicted RBP11.19□□□□□ -0.62
VPS54-203ENST00000409558 CLDN14O95500 239 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 MT-ND4LP03901 98 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 DLX1P56177 255 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 LYG1Q8N1E2 194 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 Q8NFD4 153 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 OR10P1Q8NGE3 313 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 CCL13Q99616 98 aa11.19□□□□□ -0.62
VPS54-203ENST00000409558 TRGC2P03986 189 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 ACAA1P09110 424 aaPredicted RBP11.18□□□□□ -0.62
VPS54-203ENST00000409558 PRB4P10163 310 aaPredicted RBP11.18□□□□□ -0.62
VPS54-203ENST00000409558 GFI1BQ5VTD9 330 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 CISD2Q8N5K1 135 aaKnown RBP11.18□□□□□ -0.62
VPS54-203ENST00000409558 PGPEP1LA6NFU8 196 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 ZNF737O75373 536 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 MDH2P40926 338 aaKnown RBP11.18□□□□□ -0.62
VPS54-203ENST00000409558 Q8IYB0 196 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 Q8WTZ3 238 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 MARCH11A6NNE9 402 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 IQCF6A8MYZ5 107 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 GYPAP02724 150 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 OR51G1Q8NGK1 321 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 CLDND2Q8NHS1 167 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 SMIM7Q9BQ49 75 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 ASCL3Q9NQ33 180 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 ERVK11-1P61568 191 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 ACSM6Q6P461 480 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 ZNF645Q8N7E2 425 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 C15orf54Q8N8G6 183 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 LFNGQ8NES3 379 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 TAF15Q92804 592 aaKnown RBP eCLIP11.18□□□□□ -0.62
VPS54-203ENST00000409558 KIAA1456Q9P272 454 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 GAB2Q9UQC2 676 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 WIPI2Q9Y4P8 454 aa11.18□□□□□ -0.62
VPS54-203ENST00000409558 OOEPA6NGQ2 149 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 ACTL6BO94805 426 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 MEOX2P50222 304 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 MSMO1Q15800 293 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 RPP25LQ8N5L8 163 aaKnown RBP11.17□□□□□ -0.62
VPS54-203ENST00000409558 R3HDM4Q96D70 268 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 MALRD1Q5VYJ5 2156 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 ZNF146Q15072 292 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 RHEBQ15382 184 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 FAM216BQ8N7L0 139 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 OR10G4Q8NGN3 311 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 OR10G9Q8NGN4 311 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 OR10G7Q8NGN6 311 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 OR4A16Q8NH70 328 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 PRR33A8MZF0 331 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 PAGE4O60829 102 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 OR9G9P0C7N8 305 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 TVP23CQ96ET8 276 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 WFIKKN1Q96NZ8 548 aa11.17□□□□□ -0.62
VPS54-203ENST00000409558 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.17□□□□□ -0.62
VPS54-203ENST00000409558 DKK4Q9UBT3 224 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms