RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 NOXA1Q86UR1 476 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 DDB2Q92466 427 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 TNFRSF14Q92956 283 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 MBD6Q96DN6 1003 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 S1PR3Q99500 378 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 KPTNQ9Y664 436 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 TOR1AO14656 332 aa15.14■□□□□ 0.01
CLN3-206ENST00000360019 LPAR6P43657 344 aa15.14■□□□□ 0.01
CLN3-206ENST00000360019 GZMKP49863 264 aa15.14■□□□□ 0.01
CLN3-206ENST00000360019 ZNF137PP52743 207 aa15.14■□□□□ 0.01
CLN3-206ENST00000360019 ZNF816Q0VGE8 651 aaPredicted RBP15.14■□□□□ 0.01
CLN3-206ENST00000360019 DIAPH2-AS1Q14236 149 aa15.14■□□□□ 0.01
CLN3-206ENST00000360019 HLA-DRB5Q30154 266 aa15.14■□□□□ 0.01
CLN3-206ENST00000360019 PNKDQ8N490 385 aa15.14■□□□□ 0.01
CLN3-206ENST00000360019 TCTEX1D1Q8N7M0 179 aa15.14■□□□□ 0.01
CLN3-206ENST00000360019 ZNF383Q8NA42 475 aa15.14■□□□□ 0.01
CLN3-206ENST00000360019 OR11H4Q8NGC9 324 aa15.14■□□□□ 0.01
CLN3-206ENST00000360019 ST6GALNAC6Q969X2 333 aa15.14■□□□□ 0.01
CLN3-206ENST00000360019 NMES1Q9C002 83 aa15.14■□□□□ 0.01
CLN3-206ENST00000360019 SIRPDQ9H106 197 aa15.14■□□□□ 0.01
CLN3-206ENST00000360019 FAM212BQ9NTI7 297 aaPredicted RBP15.14■□□□□ 0.01
CLN3-206ENST00000360019 A0A096LNT2 108 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 A0A0G2JRQ6 117 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 DUXBA0A1W2PPF3 345 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 CT45A6P0DMU7 189 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 CT45A5P0DMU8 189 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 CT45A7P0DMV0 189 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 IL15RAQ13261 267 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 NMSQ5H8A3 153 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 HCP5Q6MZN7 132 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 VMO1Q7Z5L0 202 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 BEND2Q8NDZ0 799 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 PPP1R1CQ8WVI7 109 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 C2orf50Q96LR7 162 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 UNKLQ9H9P5 680 aaKnown RBP15.13■□□□□ 0.01
CLN3-206ENST00000360019 CELSR1Q9NYQ6 3014 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 PDZD2O15018 2839 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 TRAV14DV4A0A0A6YYC5 116 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 FCGR3BO75015 233 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 S1PR2O95136 353 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 MMP9P14780 707 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 RPA2P15927 270 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 VDAC1P21796 283 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 USF1P22415 310 aaPredicted RBP15.13■□□□□ 0.01
CLN3-206ENST00000360019 THBS3P49746 956 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 KLRD1Q13241 179 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 IAH1Q2TAA2 248 aaPredicted RBP15.13■□□□□ 0.01
CLN3-206ENST00000360019 OR4P4Q8NGL7 312 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 OR13D1Q8NGV5 346 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 TMEM186Q96B77 213 aa15.13■□□□□ 0.01
CLN3-206ENST00000360019 IGKV1-5P01602 117 aa15.12■□□□□ 0.01
CLN3-206ENST00000360019 REG1BP48304 166 aa15.12■□□□□ 0.01
CLN3-206ENST00000360019 PRRX1P54821 245 aa15.12■□□□□ 0.01
CLN3-206ENST00000360019 LRRC37A5PQ49AS3 106 aa15.12■□□□□ 0.01
CLN3-206ENST00000360019 Q5PR19 223 aa15.12■□□□□ 0.01
CLN3-206ENST00000360019 FAM219AQ8IW50 185 aa15.12■□□□□ 0.01
CLN3-206ENST00000360019 OR11H6Q8NGC7 330 aa15.12■□□□□ 0.01
CLN3-206ENST00000360019 RBMXL1Q96E39 390 aaKnown RBP15.12■□□□□ 0.01
CLN3-206ENST00000360019 MRPL20Q9BYC9 149 aaKnown RBP15.12■□□□□ 0.01
CLN3-206ENST00000360019 RANBP3Q9H6Z4 567 aaPredicted RBP15.12■□□□□ 0.01
CLN3-206ENST00000360019 DVL1P1P54792 670 aaPredicted RBP15.11■□□□□ 0.01
CLN3-206ENST00000360019 CYCSP99999 105 aaKnown RBP15.11■□□□□ 0.01
CLN3-206ENST00000360019 FAM71F2Q6NXP2 309 aa15.11■□□□□ 0.01
CLN3-206ENST00000360019 KRTAP1-3Q8IUG1 177 aa15.11■□□□□ 0.01
CLN3-206ENST00000360019 CD300LFQ8TDQ1 290 aa15.11■□□□□ 0.01
CLN3-206ENST00000360019 ADTRPQ96IZ2 230 aa15.11■□□□□ 0.01
CLN3-206ENST00000360019 GSKIPQ9P0R6 139 aa15.11■□□□□ 0.01
CLN3-206ENST00000360019 PRELID3BQ9Y3B1 194 aa15.11■□□□□ 0.01
CLN3-206ENST00000360019 BUB1B-PAK6H3BSN5 160 aa15.1■□□□□ 0.01
CLN3-206ENST00000360019 ZBTB8BQ8NAP8 495 aaPredicted RBP15.1■□□□□ 0.01
CLN3-206ENST00000360019 TBX15Q96SF7 602 aa15.1■□□□□ 0.01
CLN3-206ENST00000360019 PCGF1Q9BSM1 259 aa15.1■□□□□ 0.01
CLN3-206ENST00000360019 INSIG2Q9Y5U4 225 aa15.1■□□□□ 0.01
CLN3-206ENST00000360019 ZANQ9Y493 2812 aa15.1■□□□□ 0.01
CLN3-206ENST00000360019 RNASEK-C17orf49H0YIS7 233 aa15.1■□□□□ 0.01
CLN3-206ENST00000360019 RBFOX2O43251 390 aaKnown RBP eCLIP15.1■□□□□ 0.01
CLN3-206ENST00000360019 HOXB4P17483 251 aaPredicted RBP15.1■□□□□ 0.01
CLN3-206ENST00000360019 IL3RAP26951 378 aa15.1■□□□□ 0.01
CLN3-206ENST00000360019 AKR1C2P52895 323 aa15.1■□□□□ 0.01
CLN3-206ENST00000360019 IZUMO4Q1ZYL8 232 aa15.1■□□□□ 0.01
CLN3-206ENST00000360019 LDLRAD2Q5SZI1 272 aa15.1■□□□□ 0.01
CLN3-206ENST00000360019 LSM10Q969L4 123 aaKnown RBP15.1■□□□□ 0.01
CLN3-206ENST00000360019 GPR146Q96CH1 333 aa15.1■□□□□ 0.01
CLN3-206ENST00000360019 HYLS1Q96M11 299 aa15.1■□□□□ 0.01
CLN3-206ENST00000360019 HEXA-AS1Q9H8Q6 139 aa15.1■□□□□ 0.01
CLN3-206ENST00000360019 CCDC168Q8NDH2 2452 aa15.09■□□□□ 0.01
CLN3-206ENST00000360019 PIGBOS1A0A0B4J2F0 54 aa15.09■□□□□ 0.01
CLN3-206ENST00000360019 ODF3BA8MYP8 253 aa15.09■□□□□ 0.01
CLN3-206ENST00000360019 TOX4O94842 621 aa15.09■□□□□ 0.01
CLN3-206ENST00000360019 ARG1P05089 322 aa15.09■□□□□ 0.01
CLN3-206ENST00000360019 G6PCP35575 357 aa15.09■□□□□ 0.01
CLN3-206ENST00000360019 KIR2DS2P43631 304 aa15.09■□□□□ 0.01
CLN3-206ENST00000360019 PDZD9Q8IXQ8 264 aa15.09■□□□□ 0.01
CLN3-206ENST00000360019 GRPEL2Q8TAA5 225 aa15.09■□□□□ 0.01
CLN3-206ENST00000360019 NABP2Q9BQ15 211 aa15.09■□□□□ 0.01
CLN3-206ENST00000360019 PLEKHA2Q9HB19 425 aa15.09■□□□□ 0.01
CLN3-206ENST00000360019 MPC2O95563 127 aa15.08■□□□□ 0.01
CLN3-206ENST00000360019 HPRT1P00492 218 aa15.08■□□□□ 0.01
CLN3-206ENST00000360019 KRASP01116 189 aa15.08■□□□□ 0.01
CLN3-206ENST00000360019 PSMB6P28072 239 aa15.08■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms