RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 YPEL4Q96NS1 127 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 HSD17B10Q99714 261 aaKnown RBP18.15■□□□□ 0.5
SHMT1-202ENST00000352886 LAMA5O15230 3695 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 A0A1W2PPE3 182 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 RAB29O14966 203 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 RBMXL2O75526 392 aaKnown RBP18.15■□□□□ 0.5
SHMT1-202ENST00000352886 ADH4P08319 380 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 OR2B8PP59922 312 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 PAX5Q02548 391 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 RPRMLQ8N4K4 120 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 DTD1Q8TEA8 209 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 PINX1Q96BK5 328 aaKnown RBP18.15■□□□□ 0.5
SHMT1-202ENST00000352886 MUCL1Q96DR8 90 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 PLPPR2Q96GM1 343 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 CISD1Q9NZ45 108 aaKnown RBP18.15■□□□□ 0.5
SHMT1-202ENST00000352886 C5orf52A6NGY3 159 aa18.14■□□□□ 0.5
SHMT1-202ENST00000352886 RAB11AP62491 216 aa18.14■□□□□ 0.5
SHMT1-202ENST00000352886 LAMP3Q9UQV4 416 aa18.14■□□□□ 0.5
SHMT1-202ENST00000352886 IGHV3OR15-7A0A075B7D8 119 aa18.14■□□□□ 0.49
SHMT1-202ENST00000352886 SPRNQ5BIV9 151 aa18.14■□□□□ 0.49
SHMT1-202ENST00000352886 ZNF474Q6S9Z5 364 aaPredicted RBP18.14■□□□□ 0.49
SHMT1-202ENST00000352886 OR10G4Q8NGN3 311 aa18.14■□□□□ 0.49
SHMT1-202ENST00000352886 MALSU1Q96EH3 234 aa18.14■□□□□ 0.49
SHMT1-202ENST00000352886 MAS1LP35410 378 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 SPINK9Q5DT21 86 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 GCSAMQ8N6F7 178 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 OR2V2Q96R30 315 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 WASF3Q9UPY6 502 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 A0A087WWC5 75 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 MAP1LC3B2A6NCE7 125 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 MARCH11A6NNE9 402 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 TIMM23BQ5SRD1 257 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 FAM90A2PQ658T7 463 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 SLC35E3Q7Z769 313 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 MAP1LC3BQ9GZQ8 125 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 GSN-AS1Q9NRJ2 163 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 GNG12Q9UBI6 72 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 FAM215AQ9Y5M1 114 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 HCFC1P51610 2035 aa18.13■□□□□ 0.49
SHMT1-202ENST00000352886 PMS2P5A8MQ11 134 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 IGKV1D-33P01593 117 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 IGKV1-33P01594 117 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 GPR12P47775 334 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 RPS16P62249 146 aaKnown RBP18.12■□□□□ 0.49
SHMT1-202ENST00000352886 NCR3LG1Q68D85 454 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 VHLLQ6RSH7 139 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 IGFL3Q6UXB1 125 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 HEPN1Q6WQI6 88 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 EDARADDQ8WWZ3 215 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 TIMM9Q9Y5J7 89 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 GZMHP20718 246 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 EIF2S3P41091 472 aaKnown RBP18.12■□□□□ 0.49
SHMT1-202ENST00000352886 SLC16A13Q7RTY0 426 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 RPP25LQ8N5L8 163 aaKnown RBP18.12■□□□□ 0.49
SHMT1-202ENST00000352886 OR10P1Q8NGE3 313 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 TMEM147Q9BVK8 224 aa18.12■□□□□ 0.49
SHMT1-202ENST00000352886 IGHV3-13P01766 116 aa18.11■□□□□ 0.49
SHMT1-202ENST00000352886 CRYAAP02489 173 aa18.11■□□□□ 0.49
SHMT1-202ENST00000352886 ATP6V1FQ16864 119 aa18.11■□□□□ 0.49
SHMT1-202ENST00000352886 MOGAT3Q86VF5 341 aa18.11■□□□□ 0.49
SHMT1-202ENST00000352886 ZNRF1Q8ND25 227 aa18.11■□□□□ 0.49
SHMT1-202ENST00000352886 SNX22Q96L94 193 aa18.11■□□□□ 0.49
SHMT1-202ENST00000352886 CIB3Q96Q77 187 aaPredicted RBP18.11■□□□□ 0.49
SHMT1-202ENST00000352886 CEBPZOSA8MTT3 80 aa18.11■□□□□ 0.49
SHMT1-202ENST00000352886 UBE2CO00762 179 aa18.11■□□□□ 0.49
SHMT1-202ENST00000352886 MGST3O14880 152 aa18.11■□□□□ 0.49
SHMT1-202ENST00000352886 PROP1O75360 226 aa18.11■□□□□ 0.49
SHMT1-202ENST00000352886 KLF3P57682 345 aaPredicted RBP18.11■□□□□ 0.49
SHMT1-202ENST00000352886 MORN2Q502X0 79 aa18.11■□□□□ 0.49
SHMT1-202ENST00000352886 FAM90A1Q86YD7 464 aa18.11■□□□□ 0.49
SHMT1-202ENST00000352886 R3HDM4Q96D70 268 aa18.11■□□□□ 0.49
SHMT1-202ENST00000352886 DUTP33316 252 aaKnown RBP18.1■□□□□ 0.49
SHMT1-202ENST00000352886 CFHR2P36980 270 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 PLA2G5P39877 138 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 ZNF343Q6P1L6 599 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 ACSM6Q6P461 480 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 CENPVQ7Z7K6 275 aaPredicted RBP18.1■□□□□ 0.49
SHMT1-202ENST00000352886 PPP1R35Q8TAP8 253 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 CA5BP1Q8WTZ4 195 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 MEGF10Q96KG7 1140 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 MRPL37Q9BZE1 423 aaKnown RBP18.1■□□□□ 0.49
SHMT1-202ENST00000352886 SLC39A9Q9NUM3 307 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 JPT1Q9UK76 154 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 SPRY3O43610 288 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 FGF7P21781 194 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 MRGPRGQ86SM5 289 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 LHX4Q969G2 390 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 VAX2Q9UIW0 290 aa18.1■□□□□ 0.49
SHMT1-202ENST00000352886 FCGR3BO75015 233 aa18.09■□□□□ 0.49
SHMT1-202ENST00000352886 IGHV3-7P01780 117 aa18.09■□□□□ 0.49
SHMT1-202ENST00000352886 GLRXP35754 106 aa18.09■□□□□ 0.49
SHMT1-202ENST00000352886 EDDM3BP56851 147 aa18.09■□□□□ 0.49
SHMT1-202ENST00000352886 Q6ZS92 163 aa18.09■□□□□ 0.49
SHMT1-202ENST00000352886 URGCP-MRPS24S4R325 110 aa18.09■□□□□ 0.49
SHMT1-202ENST00000352886 SMIM6P0DI80 62 aa18.09■□□□□ 0.49
SHMT1-202ENST00000352886 FABP9Q0Z7S8 132 aa18.09■□□□□ 0.49
SHMT1-202ENST00000352886 ELOBQ15370 118 aa18.09■□□□□ 0.49
SHMT1-202ENST00000352886 Q8WTZ3 238 aa18.09■□□□□ 0.49
SHMT1-202ENST00000352886 ZNF251Q9BRH9 671 aa18.09■□□□□ 0.49
SHMT1-202ENST00000352886 QTRT1Q9BXR0 403 aaKnown RBP18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms