RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 GAMTQ14353 236 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 RTP5Q14D33 572 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 ZNF766Q5HY98 468 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 CENPVQ7Z7K6 275 aaPredicted RBP18.43■□□□□ 0.54
SHMT1-201ENST00000316694 ZBTB34Q8NCN2 500 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 LAMP3Q9UQV4 416 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 P0C879 139 aa18.42■□□□□ 0.54
SHMT1-201ENST00000316694 PMS2P11Q13670 270 aa18.42■□□□□ 0.54
SHMT1-201ENST00000316694 ATP1A1-AS1Q5TC04 95 aa18.42■□□□□ 0.54
SHMT1-201ENST00000316694 HIST1H2BLQ99880 126 aa18.42■□□□□ 0.54
SHMT1-201ENST00000316694 OOEPA6NGQ2 149 aa18.42■□□□□ 0.54
SHMT1-201ENST00000316694 J3QW42 95 aa18.42■□□□□ 0.54
SHMT1-201ENST00000316694 IGHV1-2P23083 117 aa18.42■□□□□ 0.54
SHMT1-201ENST00000316694 BRWD1-AS2P59051 145 aa18.42■□□□□ 0.54
SHMT1-201ENST00000316694 ATP6V1FQ16864 119 aa18.42■□□□□ 0.54
SHMT1-201ENST00000316694 DHRS13Q6UX07 377 aa18.42■□□□□ 0.54
SHMT1-201ENST00000316694 TPRX1Q8N7U7 411 aa18.42■□□□□ 0.54
SHMT1-201ENST00000316694 PITPNC1Q9UKF7 332 aa18.42■□□□□ 0.54
SHMT1-201ENST00000316694 BDP1A6H8Y1 2624 aa18.42■□□□□ 0.54
SHMT1-201ENST00000316694 IGHV3-43A0A0B4J1X8 118 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 IQCF6A8MYZ5 107 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 H7BYZ3 331 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 PFN1P07737 140 aaKnown RBP18.41■□□□□ 0.54
SHMT1-201ENST00000316694 IGHV3-43DP0DP04 118 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 GALR1P47211 349 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 GABRA6Q16445 453 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 H2BFWTQ7Z2G1 175 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 ZNF709Q8N972 641 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 RHOVQ96L33 236 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 PMS2P5A8MQ11 134 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 TMEM250H0YL14 139 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 COX5AP20674 150 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 TGFBR3Q03167 851 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 KLF14Q8TD94 323 aaPredicted RBP18.41■□□□□ 0.54
SHMT1-201ENST00000316694 RAB24Q969Q5 203 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 OR5B12Q96R08 314 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 ELOVL1Q9BW60 279 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 NPCDR1Q9BY65 106 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 ACTR3CQ9C0K3 210 aaPredicted RBP18.41■□□□□ 0.54
SHMT1-201ENST00000316694 SRD5A3Q9H8P0 318 aa18.41■□□□□ 0.54
SHMT1-201ENST00000316694 SMCO3A2RU48 225 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 MBP02144 154 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 SSTR5P35346 364 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 EIF4EBP1Q13541 118 aaPredicted RBP18.4■□□□□ 0.54
SHMT1-201ENST00000316694 Q6ZR03 302 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 COQ2Q96H96 371 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 HES4Q9HCC6 221 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 PRR14LQ5THK1 2151 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 TMEM210A6NLX4 147 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 DEFB108AA8MXU0 73 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 CDX4O14627 284 aaPredicted RBP18.4■□□□□ 0.54
SHMT1-201ENST00000316694 MLNRO43193 412 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 PAGE4O60829 102 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 ARG2P78540 354 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 COL10A1Q03692 680 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 SLC35E4Q6ICL7 350 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 RFESDQ8TAC1 157 aa18.4■□□□□ 0.54
SHMT1-201ENST00000316694 NDUFS6O75380 124 aaKnown RBP18.39■□□□□ 0.53
SHMT1-201ENST00000316694 GZMHP20718 246 aa18.39■□□□□ 0.53
SHMT1-201ENST00000316694 TMPRSS7Q7RTY8 843 aa18.39■□□□□ 0.53
SHMT1-201ENST00000316694 OR51G1Q8NGK1 321 aa18.39■□□□□ 0.53
SHMT1-201ENST00000316694 MANBALQ9NQG1 85 aa18.39■□□□□ 0.53
SHMT1-201ENST00000316694 NBEAQ8NFP9 2946 aa18.39■□□□□ 0.53
SHMT1-201ENST00000316694 TNFSF15O95150 251 aa18.39■□□□□ 0.53
SHMT1-201ENST00000316694 CLDN14O95500 239 aa18.39■□□□□ 0.53
SHMT1-201ENST00000316694 SP9P0CG40 484 aa18.39■□□□□ 0.53
SHMT1-201ENST00000316694 PRAMEF6Q5VXH4 476 aa18.39■□□□□ 0.53
SHMT1-201ENST00000316694 OR5T1Q8NG75 326 aa18.39■□□□□ 0.53
SHMT1-201ENST00000316694 GMPPAQ96IJ6 420 aaPredicted RBP18.39■□□□□ 0.53
SHMT1-201ENST00000316694 FER1L6-AS2Q96M78 137 aa18.39■□□□□ 0.53
SHMT1-201ENST00000316694 A0A1W2PPQ1 181 aa18.38■□□□□ 0.53
SHMT1-201ENST00000316694 LINC00473A8K010 186 aa18.38■□□□□ 0.53
SHMT1-201ENST00000316694 PPP5D1E7EU14 171 aa18.38■□□□□ 0.53
SHMT1-201ENST00000316694 GPX4P36969 197 aaPredicted RBP18.38■□□□□ 0.53
SHMT1-201ENST00000316694 Q3ZCU0 254 aa18.38■□□□□ 0.53
SHMT1-201ENST00000316694 PCGF1Q9BSM1 259 aa18.38■□□□□ 0.53
SHMT1-201ENST00000316694 PRO1933Q9H354 126 aa18.38■□□□□ 0.53
SHMT1-201ENST00000316694 FZR1Q9UM11 496 aa18.38■□□□□ 0.53
SHMT1-201ENST00000316694 SPENQ96T58 3664 aaKnown RBP18.38■□□□□ 0.53
SHMT1-201ENST00000316694 AGFG2O95081 481 aa18.38■□□□□ 0.53
SHMT1-201ENST00000316694 C11orf53Q8IXP5 236 aa18.38■□□□□ 0.53
SHMT1-201ENST00000316694 TMEM183AQ8IXX5 376 aa18.38■□□□□ 0.53
SHMT1-201ENST00000316694 METRNQ9UJH8 293 aa18.38■□□□□ 0.53
SHMT1-201ENST00000316694 ST8SIA5O15466 376 aa18.37■□□□□ 0.53
SHMT1-201ENST00000316694 LTC4SQ16873 150 aa18.37■□□□□ 0.53
SHMT1-201ENST00000316694 CIB3Q96Q77 187 aaPredicted RBP18.37■□□□□ 0.53
SHMT1-201ENST00000316694 PSG11Q9UQ72 335 aa18.37■□□□□ 0.53
SHMT1-201ENST00000316694 DSPP15924 2871 aaKnown RBP18.37■□□□□ 0.53
SHMT1-201ENST00000316694 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP18.37■□□□□ 0.53
SHMT1-201ENST00000316694 RAB29O14966 203 aa18.37■□□□□ 0.53
SHMT1-201ENST00000316694 GYPAP02724 150 aa18.37■□□□□ 0.53
SHMT1-201ENST00000316694 BMP5P22003 454 aa18.37■□□□□ 0.53
SHMT1-201ENST00000316694 OR13A1Q8NGR1 328 aa18.37■□□□□ 0.53
SHMT1-201ENST00000316694 PYGO2Q9BRQ0 406 aa18.37■□□□□ 0.53
SHMT1-201ENST00000316694 ACP7Q6ZNF0 438 aa18.36■□□□□ 0.53
SHMT1-201ENST00000316694 MRPL37Q9BZE1 423 aaKnown RBP18.36■□□□□ 0.53
SHMT1-201ENST00000316694 CFAP47Q6ZTR5 3102 aa18.36■□□□□ 0.53
SHMT1-201ENST00000316694 PCNX2A6NKB5 2137 aa18.36■□□□□ 0.53
SHMT1-201ENST00000316694 MARCH11A6NNE9 402 aa18.35■□□□□ 0.53
SHMT1-201ENST00000316694 P2RY6Q15077 328 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms