RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 SP6Q3SY56 376 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 PLAC9Q5JTB6 97 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 C19orf35Q6ZS72 473 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 LRTM2Q8N967 370 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 DPF1Q92782 380 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 PSMG3Q9BT73 122 aaPredicted RBP8.72□□□□□ -1.01
VPS39-214ENST00000614932 MRPL18Q9H0U6 180 aaKnown RBP8.72□□□□□ -1.01
VPS39-214ENST00000614932 FGF21Q9NSA1 209 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 MED12Q93074 2177 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 SAA2-SAA4A0A096LPE2 208 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 RAD51DO75771 328 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 IGLL1P15814 213 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 FBLP22087 321 aaKnown RBP8.72□□□□□ -1.01
VPS39-214ENST00000614932 IL12BP29460 328 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 ZNF133P52736 654 aaPredicted RBP8.72□□□□□ -1.01
VPS39-214ENST00000614932 RRADP55042 308 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 CTXN1P60606 82 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 IGLV3-21P80748 117 aaPredicted RBP8.72□□□□□ -1.01
VPS39-214ENST00000614932 ZNF726P1Q15940 193 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 HLA-BQ31612 363 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 HLA-DQA1Q5Y7H0 255 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 CPEB2Q7Z5Q1 589 aaKnown RBP8.72□□□□□ -1.01
VPS39-214ENST00000614932 NEUROG1Q92886 237 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 C18orf12Q96KH6 178 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 FBLN5Q9UBX5 448 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 HHLA2Q9UM44 414 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 MRPS17Q9Y2R5 130 aaKnown RBP8.72□□□□□ -1.01
VPS39-214ENST00000614932 A0A0G2JMM0 328 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 SPAARA0A1B0GVQ0 90 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 A0A1W2PPB8 328 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 TMEM14DPA8MWL7 114 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 KIR3DP1A8MWS1 328 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 SOCS1O15524 211 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 CST7O76096 145 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 CCL2P13500 99 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 PMCHP20382 165 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 EGR4Q05215 589 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 CD300EQ496F6 205 aaPredicted RBP8.72□□□□□ -1.01
VPS39-214ENST00000614932 ACSF3Q4G176 576 aaPredicted RBP8.72□□□□□ -1.01
VPS39-214ENST00000614932 IGF2-ASQ6U949 168 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 LINC00114Q6XXX2 140 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 CCDC71LQ8N9Z2 235 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 MRPL30Q8TCC3 161 aaKnown RBP8.72□□□□□ -1.01
VPS39-214ENST00000614932 HOXB13Q92826 284 aaPredicted RBP8.72□□□□□ -1.01
VPS39-214ENST00000614932 KCNS1Q96KK3 526 aa8.72□□□□□ -1.01
VPS39-214ENST00000614932 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.71□□□□□ -1.02
VPS39-214ENST00000614932 A0A0A6YYD4 124 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 GAGE12HA6NDE8 117 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 H0YIG0 161 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 DUX1O43812 170 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 ZNF728P0DKX0 622 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 CBLN1P23435 193 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 PLCXD2Q0VAA5 305 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 LTC4SQ16873 150 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 ZNF788Q6ZQV5 615 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 LIAT1Q6ZQX7 453 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 SLC22A24Q8N4F4 322 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 SGMS2Q8NHU3 365 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 OTOSQ8NHW6 89 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 ZNF721Q8TF20 911 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 BORCS7Q96B45 105 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 ZC2HC1AQ96GY0 325 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 NAA60Q9H7X0 242 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 SS18L2Q9UHA2 77 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 TRBV7-9A0A0J9YWB2 115 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 SHISA8B8ZZ34 492 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 SLC33A1O00400 549 aaPredicted RBP8.71□□□□□ -1.02
VPS39-214ENST00000614932 MPPED1O15442 326 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 BRI3O95415 125 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 ZNF20P17024 532 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 CXCL12P48061 93 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 PIGPP57054 158 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 HLA-DRB5Q30154 266 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 ALG10Q5BKT4 473 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 GUSBP11Q6P575 273 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 PLXDC1Q8IUK5 500 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 KCNG3Q8TAE7 436 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 B9D1Q9UPM9 204 aa8.71□□□□□ -1.02
VPS39-214ENST00000614932 KIF26BQ2KJY2 2108 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 ZDBF2Q9HCK1 2354 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 A0A1W2PS18 150 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 FAM231BA6NCW3 169 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 H0YJW9 148 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 H3BMH7 237 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 PDE6DO43924 150 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 CA2P00918 260 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 CELA3BP08861 270 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 CYB561P49447 251 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 PSMB3P49720 205 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 IGFBP7Q16270 282 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 CEACAM21Q3KPI0 293 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 C17orf82Q86X59 251 aaPredicted RBP8.7□□□□□ -1.02
VPS39-214ENST00000614932 GPX7Q96SL4 187 aaPredicted RBP8.7□□□□□ -1.02
VPS39-214ENST00000614932 HINT2Q9BX68 163 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 PECRQ9BY49 303 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 FNDC4Q9H6D8 234 aaPredicted RBP8.7□□□□□ -1.02
VPS39-214ENST00000614932 AKIRIN1Q9H9L7 192 aaPredicted RBP8.7□□□□□ -1.02
VPS39-214ENST00000614932 GNB4Q9HAV0 340 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 SLC7A10Q9NS82 523 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 FER1L5A0AVI2 2057 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms