RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 EXTL2Q9UBQ6 330 aa12.88□□□□□ -0.35
SHKBP1-215ENST00000597649 PSG11Q9UQ72 335 aa12.88□□□□□ -0.35
SHKBP1-215ENST00000597649 KCNK7Q9Y2U2 307 aa12.88□□□□□ -0.35
SHKBP1-215ENST00000597649 SORL1Q92673 2214 aa12.88□□□□□ -0.35
SHKBP1-215ENST00000597649 TMEM235A6NFC5 223 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 IGKV1D-33P01593 117 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 IGKV1-33P01594 117 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 TAS2R20P59543 309 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 ZNF260Q3ZCT1 412 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 HACD4Q5VWC8 232 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 TEX38Q6PEX7 206 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 MOB1BQ7L9L4 216 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 GAPTQ8N292 157 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 OR5M8Q8NGP6 311 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 ARL11Q969Q4 196 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 CYYR1Q96J86 154 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 HDHD3Q9BSH5 251 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 NXF2Q9GZY0 626 aaKnown RBP12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 AUNIPQ9H7T9 357 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 CALYQ9NYX4 217 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 MGAT4AQ9UM21 535 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 A3GALT2U3KPV4 340 aa12.87□□□□□ -0.35
SHKBP1-215ENST00000597649 PLECQ15149 4684 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 SEC14L6B5MCN3 397 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 SPINT2O43291 252 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 ORC5O43913 435 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 NAPSAO96009 420 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 GPR12P47775 334 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 CDX1P47902 265 aaPredicted RBP12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 EBI3Q14213 229 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 SBSPONQ8IVN8 264 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 FOXRED2Q8IWF2 684 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 LAX1Q8IWV1 398 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 PRR18Q8N4B5 295 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 OR8U1Q8NH10 309 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 RFESDQ8TAC1 157 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 RBMXL1Q96E39 390 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 DIRAS2Q96HU8 199 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 LINC00574Q9H8X3 128 aa12.86□□□□□ -0.35
SHKBP1-215ENST00000597649 RCC1P18754 421 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-215ENST00000597649 MADCAM1Q13477 382 aa12.85□□□□□ -0.35
SHKBP1-215ENST00000597649 LTC4SQ16873 150 aa12.85□□□□□ -0.35
SHKBP1-215ENST00000597649 CNIH2Q6PI25 160 aa12.85□□□□□ -0.35
SHKBP1-215ENST00000597649 RNF152Q8N8N0 203 aa12.85□□□□□ -0.35
SHKBP1-215ENST00000597649 C15orf40Q8WUR7 153 aa12.85□□□□□ -0.35
SHKBP1-215ENST00000597649 MIXL1Q9H2W2 232 aa12.85□□□□□ -0.35
SHKBP1-215ENST00000597649 TAF9BQ9HBM6 251 aa12.85□□□□□ -0.35
SHKBP1-215ENST00000597649 MBNL3Q9NUK0 354 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-215ENST00000597649 IDI2-AS1Q9NZ38 188 aa12.85□□□□□ -0.35
SHKBP1-215ENST00000597649 ELF5Q9UKW6 265 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-215ENST00000597649 AMMECR1Q9Y4X0 333 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-215ENST00000597649 TRBV6-6A0A0A6YYG2 114 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 IGHV3-72A0A0B4J1Y9 119 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 A0A1W2PPE3 182 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 C12orf77C9JDV5 145 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 NPIPB11E5RHQ5 1161 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 AP4M1O00189 453 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 PRSS3P35030 304 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 SSTR5P35346 364 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 GNG10P50151 68 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 RAB7AP51149 207 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 FOXE3Q13461 319 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 CNPY1Q3B7I2 92 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 ZNF554Q86TJ5 538 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 SNX29P2Q8IUI4 249 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 OR8H3Q8N146 312 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 Q8N6K4 173 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 Q8N9W7 124 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 OR10A7Q8NGE5 316 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 UBALD1Q8TB05 177 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 NUDCD2Q8WVJ2 157 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 EAF1Q96JC9 268 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 RCHY1Q96PM5 261 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 ST6GALNAC5Q9BVH7 336 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 Q9N2K0 584 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 PLSCR3Q9NRY6 295 aa12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 ZNF256Q9Y2P7 627 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-215ENST00000597649 HBZP02008 142 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 FCGR3AP08637 254 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 PTHLHP12272 177 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 DTYMKP23919 212 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 TNFSF8P32971 234 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 CBX5P45973 191 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 REG1BP48304 166 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 CFHR3Q02985 330 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 FHL3Q13643 280 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 CXorf66Q5JRM2 361 aaPredicted RBP12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 ZNF880Q6PDB4 577 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 TGIF2LXQ8IUE1 241 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 GALMQ96C23 342 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 IFT46Q9NQC8 304 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 RABL2AQ9UBK7 228 aaPredicted RBP12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 RABL2BQ9UNT1 228 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 SMAD5-AS1Q9Y6J3 95 aa12.83□□□□□ -0.36
SHKBP1-215ENST00000597649 LCE6AA0A183 80 aa12.82□□□□□ -0.36
SHKBP1-215ENST00000597649 FABP12A6NFH5 140 aa12.82□□□□□ -0.36
SHKBP1-215ENST00000597649 NCBP2LA6PVI3 153 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-215ENST00000597649 TRDCB7Z8K6 153 aa12.82□□□□□ -0.36
SHKBP1-215ENST00000597649 C15orf65H3BRN8 121 aa12.82□□□□□ -0.36
SHKBP1-215ENST00000597649 SDCBPO00560 298 aaPredicted RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms