RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 C2orf68Q2NKX9 166 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 ANKRD55Q3KP44 614 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 FAM201AQ5SY85 155 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 ZNF818PQ6ZRF7 136 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 ZNF695Q8IW36 515 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 TPRX1Q8N7U7 411 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 SIGLECL1Q8N7X8 197 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 ZBTB8BQ8NAP8 495 aaPredicted RBP8.36□□□□□ -1.07
SS18-207ENST00000577636 BVESQ8NE79 360 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 OR13A1Q8NGR1 328 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 OR8U1Q8NH10 309 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 OR1L1Q8NH94 360 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 TAF15Q92804 592 aaKnown RBP eCLIP8.36□□□□□ -1.07
SS18-207ENST00000577636 RAB39BQ96DA2 213 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 TIMD4Q96H15 378 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 GAFA1Q96PS6 74 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 NMES1Q9C002 83 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 GAL3ST2Q9H3Q3 398 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 LIN7CQ9NUP9 197 aaKnown RBP8.36□□□□□ -1.07
SS18-207ENST00000577636 PIPOXQ9P0Z9 390 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 SLC25A10Q9UBX3 287 aaPredicted RBP8.36□□□□□ -1.07
SS18-207ENST00000577636 JPT1Q9UK76 154 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 PAIP2BQ9ULR5 123 aaKnown RBP8.36□□□□□ -1.07
SS18-207ENST00000577636 MAB21L2Q9Y586 359 aa8.36□□□□□ -1.07
SS18-207ENST00000577636 TENM1Q9UKZ4 2725 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 FXYD6-FXYD2A0A087WZ82 144 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 DUXBA0A1W2PPF3 345 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 ZNF729A6NN14 1252 aaPredicted RBP8.35□□□□□ -1.07
SS18-207ENST00000577636 HMSDA8MTL9 139 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 H0Y980 276 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 L7N2F9 121 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 ADAM20O43506 726 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 RP2O75695 350 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 ATG12O94817 140 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 RLN2P04090 185 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 SERPINE2P07093 398 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 RPS2P15880 293 aaKnown RBP8.35□□□□□ -1.07
SS18-207ENST00000577636 PSMB6P28072 239 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 LCN2P80188 198 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 HOXA4Q00056 320 aaPredicted RBP8.35□□□□□ -1.07
SS18-207ENST00000577636 MEF2CQ06413 473 aaPredicted RBP8.35□□□□□ -1.07
SS18-207ENST00000577636 CATR1Q13166 79 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 LY6G6FQ5SQ64 297 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 ZNF645Q8N7E2 425 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 LRTM2Q8N967 370 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 INO80EQ8NBZ0 244 aaPredicted RBP8.35□□□□□ -1.07
SS18-207ENST00000577636 OR52L2PQ8NGH6 319 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 UBALD1Q8TB05 177 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 RAB1CQ92928 201 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 SEC22AQ96IW7 307 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 C2orf50Q96LR7 162 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 SPIN2AQ99865 258 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 SPIN2BQ9BPZ2 258 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 TMEM246Q9BRR3 403 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 GON7Q9BXV9 100 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 TMEM222Q9H0R3 208 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 SLA2Q9H6Q3 261 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 CALYQ9NYX4 217 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 GSKIPQ9P0R6 139 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 TMED3Q9Y3Q3 217 aa8.35□□□□□ -1.07
SS18-207ENST00000577636 TRRAPQ9Y4A5 3859 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 MGAM2Q2M2H8 2515 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 IGKV1D-13A0A0B4J2D9 117 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 A0A1W2PPH5 198 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 J3QLI3 93 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 ARPC5O15511 151 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 PGLYRP1O75594 196 aaPredicted RBP8.34□□□□□ -1.07
SS18-207ENST00000577636 ADAP1O75689 374 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 FSTL3O95633 263 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 IGKV1-13P0DP09 117 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 F2RP25116 425 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 SSTR5P35346 364 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 RAB7AP51149 207 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 MRPS11P82912 194 aaKnown RBP8.34□□□□□ -1.07
SS18-207ENST00000577636 TMEM187Q14656 261 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 IAH1Q2TAA2 248 aaPredicted RBP8.34□□□□□ -1.07
SS18-207ENST00000577636 SP6Q3SY56 376 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 ESCO2Q56NI9 601 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 TMEM268Q5VZI3 342 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 THOC7Q6I9Y2 204 aaKnown RBP8.34□□□□□ -1.07
SS18-207ENST00000577636 C11orf87Q6NUJ2 197 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 ZNF546Q86UE3 836 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 LDLRAD3Q86YD5 345 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 C9orf62Q8N4C0 152 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 FAM216BQ8N7L0 139 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 RNASE11Q8TAA1 199 aaKnown RBP8.34□□□□□ -1.07
SS18-207ENST00000577636 GRPEL2Q8TAA5 225 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 RFESDQ8TAC1 157 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 PPP1R1CQ8WVI7 109 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 H1FXQ92522 213 aaKnown RBP8.34□□□□□ -1.07
SS18-207ENST00000577636 IL22RA2Q969J5 263 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 TOLLIPQ9H0E2 274 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 OR2D2Q9H210 308 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 TAS2R3Q9NYW6 316 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 LINC00312Q9Y6C7 94 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 MEGF8Q7Z7M0 2845 aa8.34□□□□□ -1.07
SS18-207ENST00000577636 KBTBD11-OT1A0A1B0GTJ5 212 aa8.33□□□□□ -1.08
SS18-207ENST00000577636 C15orf65H3BRN8 121 aa8.33□□□□□ -1.08
SS18-207ENST00000577636 F2RL2O00254 374 aa8.33□□□□□ -1.08
SS18-207ENST00000577636 GPR37O15354 613 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 130.4 ms