RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 TCTEX1D1Q8N7M0 179 aa13.81□□□□□ -0.2
PCF11-206ENST00000533018 FAM103A1Q9BTL3 118 aaKnown RBP13.81□□□□□ -0.2
PCF11-206ENST00000533018 CCDC90BQ9GZT6 254 aa13.81□□□□□ -0.2
PCF11-206ENST00000533018 C11orf54Q9H0W9 315 aaPredicted RBP13.81□□□□□ -0.2
PCF11-206ENST00000533018 ISYNA1Q9NPH2 558 aa13.81□□□□□ -0.2
PCF11-206ENST00000533018 METTL1Q9UBP6 276 aaKnown RBP13.81□□□□□ -0.2
PCF11-206ENST00000533018 ZNF221Q9UK13 617 aa13.81□□□□□ -0.2
PCF11-206ENST00000533018 MGAT4AQ9UM21 535 aa13.81□□□□□ -0.2
PCF11-206ENST00000533018 TRBV6-6A0A0A6YYG2 114 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 SLC17A2O00624 439 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 SOX15O60248 233 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 RBBP9O75884 186 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 ARL6IP5O75915 188 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 CLDN12P56749 244 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 RPS25P62851 125 aaKnown RBP13.8□□□□□ -0.2
PCF11-206ENST00000533018 ACTBL2Q562R1 376 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 UNQ5815/PRO19632Q6UWF5 114 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 PPP1R27Q86WC6 154 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 DLX4Q92988 240 aaPredicted RBP13.8□□□□□ -0.2
PCF11-206ENST00000533018 ARHGAP5-AS1Q96IT6 56 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 MS4A10Q96PG2 267 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 CMSS1Q9BQ75 279 aaKnown RBP13.8□□□□□ -0.2
PCF11-206ENST00000533018 AGMATQ9BSE5 352 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 C12orf4Q9NQ89 552 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 SMAD5-AS1Q9Y6J3 95 aa13.8□□□□□ -0.2
PCF11-206ENST00000533018 ITGB1BP1O14713 200 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 RGS10O43665 173 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 IGHV3-11P01762 117 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 LGALS1P09382 135 aaKnown RBP13.79□□□□□ -0.2
PCF11-206ENST00000533018 CALRP27797 417 aaKnown RBP13.79□□□□□ -0.2
PCF11-206ENST00000533018 RPS16P62249 146 aaKnown RBP13.79□□□□□ -0.2
PCF11-206ENST00000533018 MRPS15P82914 257 aaKnown RBP13.79□□□□□ -0.2
PCF11-206ENST00000533018 PSG5Q15238 335 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 TRAM1Q15629 374 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 PYHIN1Q6K0P9 492 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 TMEM91Q6ZNR0 172 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 LFNGQ8NES3 379 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 OR5AN1Q8NGI8 311 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 GFI1Q99684 422 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 RNF5Q99942 180 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 TOLLIPQ9H0E2 274 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 Q9N2K0 584 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 HSF4Q9ULV5 492 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 GAB2Q9UQC2 676 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 NUBP2Q9Y5Y2 271 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 STAB2Q8WWQ8 2551 aa13.79□□□□□ -0.2
PCF11-206ENST00000533018 IGHV4OR15-8A0A075B7B6 117 aa13.78□□□□□ -0.2
PCF11-206ENST00000533018 A0A087WW49 117 aa13.78□□□□□ -0.2
PCF11-206ENST00000533018 CA2P00918 260 aa13.78□□□□□ -0.2
PCF11-206ENST00000533018 APOA2P02652 100 aa13.78□□□□□ -0.2
PCF11-206ENST00000533018 CD37P11049 281 aa13.78□□□□□ -0.2
PCF11-206ENST00000533018 EGR2P11161 476 aaPredicted RBP13.78□□□□□ -0.2
PCF11-206ENST00000533018 CRIP2P52943 208 aaPredicted RBP13.78□□□□□ -0.2
PCF11-206ENST00000533018 AQP4P55087 323 aa13.78□□□□□ -0.2
PCF11-206ENST00000533018 TPPP2P59282 170 aa13.78□□□□□ -0.2
PCF11-206ENST00000533018 IRF3Q14653 427 aa13.78□□□□□ -0.2
PCF11-206ENST00000533018 ZNF562Q6V9R5 426 aa13.78□□□□□ -0.2
PCF11-206ENST00000533018 FAM89BQ8N5H3 189 aa13.78□□□□□ -0.2
PCF11-206ENST00000533018 OR56B1Q8NGI3 324 aa13.78□□□□□ -0.2
PCF11-206ENST00000533018 TSNAXQ99598 290 aaKnown RBP13.78□□□□□ -0.2
PCF11-206ENST00000533018 PECRQ9BY49 303 aa13.78□□□□□ -0.2
PCF11-206ENST00000533018 ZNF355PQ9NSJ1 428 aa13.78□□□□□ -0.2
PCF11-206ENST00000533018 NKX1-2Q9UD57 310 aaPredicted RBP13.78□□□□□ -0.2
PCF11-206ENST00000533018 DENRO43583 198 aaKnown RBP13.77□□□□□ -0.21
PCF11-206ENST00000533018 IGKV1-16P04430 117 aa13.77□□□□□ -0.21
PCF11-206ENST00000533018 PSMA1P25786 263 aaKnown RBP13.77□□□□□ -0.21
PCF11-206ENST00000533018 TMEM50BP56557 158 aa13.77□□□□□ -0.21
PCF11-206ENST00000533018 LINC00205P59089 165 aa13.77□□□□□ -0.21
PCF11-206ENST00000533018 TPBGQ13641 420 aa13.77□□□□□ -0.21
PCF11-206ENST00000533018 C2orf76Q3KRA6 126 aa13.77□□□□□ -0.21
PCF11-206ENST00000533018 AKIRIN2Q53H80 203 aa13.77□□□□□ -0.21
PCF11-206ENST00000533018 C19orf54Q5BKX5 351 aa13.77□□□□□ -0.21
PCF11-206ENST00000533018 CD200R1LQ6Q8B3 271 aa13.77□□□□□ -0.21
PCF11-206ENST00000533018 GRPEL2Q8TAA5 225 aa13.77□□□□□ -0.21
PCF11-206ENST00000533018 ARPC1AQ92747 370 aa13.77□□□□□ -0.21
PCF11-206ENST00000533018 FAM3DQ96BQ1 224 aa13.77□□□□□ -0.21
PCF11-206ENST00000533018 RDH8Q9NYR8 311 aa13.77□□□□□ -0.21
PCF11-206ENST00000533018 TRDCB7Z8K6 153 aa13.76□□□□□ -0.21
PCF11-206ENST00000533018 M0R1X1 148 aa13.76□□□□□ -0.21
PCF11-206ENST00000533018 CNIH1O95406 144 aa13.76□□□□□ -0.21
PCF11-206ENST00000533018 TFAP2AP05549 437 aa13.76□□□□□ -0.21
PCF11-206ENST00000533018 SNRPBP14678 240 aaKnown RBP13.76□□□□□ -0.21
PCF11-206ENST00000533018 SPNP16150 400 aa13.76□□□□□ -0.21
PCF11-206ENST00000533018 RANBP1P43487 201 aa13.76□□□□□ -0.21
PCF11-206ENST00000533018 MLLT11Q13015 90 aaPredicted RBP13.76□□□□□ -0.21
PCF11-206ENST00000533018 HES5Q5TA89 166 aa13.76□□□□□ -0.21
PCF11-206ENST00000533018 PDPNQ86YL7 162 aa13.76□□□□□ -0.21
PCF11-206ENST00000533018 ZNF383Q8NA42 475 aa13.76□□□□□ -0.21
PCF11-206ENST00000533018 PTX4Q96A99 478 aa13.76□□□□□ -0.21
PCF11-206ENST00000533018 FLYWCH2Q96CP2 140 aaKnown RBP13.76□□□□□ -0.21
PCF11-206ENST00000533018 V9GY05 133 aa13.76□□□□□ -0.21
PCF11-206ENST00000533018 FOXI3A8MTJ6 420 aaPredicted RBP13.75□□□□□ -0.21
PCF11-206ENST00000533018 BET1O15155 118 aa13.75□□□□□ -0.21
PCF11-206ENST00000533018 SLC25A17O43808 307 aa13.75□□□□□ -0.21
PCF11-206ENST00000533018 PROP1O75360 226 aa13.75□□□□□ -0.21
PCF11-206ENST00000533018 TRGV3P03979 118 aa13.75□□□□□ -0.21
PCF11-206ENST00000533018 HSPB1P04792 205 aaKnown RBP13.75□□□□□ -0.21
PCF11-206ENST00000533018 CD3GP09693 182 aa13.75□□□□□ -0.21
PCF11-206ENST00000533018 PITPNAQ00169 270 aa13.75□□□□□ -0.21
PCF11-206ENST00000533018 FABP5Q01469 135 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms