RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SLC35G3Q8N808 338 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 OR9G1Q8NH87 305 aa17.21■□□□□ 0.35
VPS28-208ENST00000527797 RBPMSQ93062 196 aaKnown RBP17.21■□□□□ 0.35
VPS28-208ENST00000527797 SAA2-SAA4A0A096LPE2 208 aa17.2■□□□□ 0.34
VPS28-208ENST00000527797 DUXBA0A1W2PPF3 345 aa17.2■□□□□ 0.34
VPS28-208ENST00000527797 A8MXK9 166 aa17.2■□□□□ 0.34
VPS28-208ENST00000527797 J3QR06 171 aa17.2■□□□□ 0.34
VPS28-208ENST00000527797 SAA2P0DJI9 122 aaPredicted RBP17.2■□□□□ 0.34
VPS28-208ENST00000527797 DNASE1P24855 282 aa17.2■□□□□ 0.34
VPS28-208ENST00000527797 ODF3L1Q8IXM7 274 aa17.2■□□□□ 0.34
VPS28-208ENST00000527797 LINC00311Q8N616 119 aa17.2■□□□□ 0.34
VPS28-208ENST00000527797 TCTEX1D1Q8N7M0 179 aa17.2■□□□□ 0.34
VPS28-208ENST00000527797 C2orf50Q96LR7 162 aa17.2■□□□□ 0.34
VPS28-208ENST00000527797 TMED3Q9Y3Q3 217 aa17.2■□□□□ 0.34
VPS28-208ENST00000527797 M0R1W7 72 aa17.19■□□□□ 0.34
VPS28-208ENST00000527797 ENSAO43768 121 aaKnown RBP17.19■□□□□ 0.34
VPS28-208ENST00000527797 DUTP33316 252 aaKnown RBP17.19■□□□□ 0.34
VPS28-208ENST00000527797 GZMKP49863 264 aa17.19■□□□□ 0.34
VPS28-208ENST00000527797 ZNF596Q8TC21 504 aa17.19■□□□□ 0.34
VPS28-208ENST00000527797 OR10C1Q96KK4 312 aa17.19■□□□□ 0.34
VPS28-208ENST00000527797 HYLS1Q96M11 299 aa17.19■□□□□ 0.34
VPS28-208ENST00000527797 S1PR3Q99500 378 aa17.19■□□□□ 0.34
VPS28-208ENST00000527797 NMES1Q9C002 83 aa17.19■□□□□ 0.34
VPS28-208ENST00000527797 BEX4Q9NWD9 120 aaPredicted RBP17.19■□□□□ 0.34
VPS28-208ENST00000527797 LINC00473A8K010 186 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 MPTX1A8MV57 137 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 NKX2-5P52952 324 aaPredicted RBP17.18■□□□□ 0.34
VPS28-208ENST00000527797 ARF6P62330 175 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 LCN2P80188 198 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 ZNF585BQ52M93 769 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 Q5BKY6 102 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 FAM212BQ9NTI7 297 aaPredicted RBP17.18■□□□□ 0.34
VPS28-208ENST00000527797 COMMD9Q9P000 198 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 IGHV4-30-2A0A087WSY4 118 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 TOR1AO14656 332 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 FOXH1O75593 365 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 RPA2P15927 270 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 LPAR6P43657 344 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 PRRX1P54821 245 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 IAH1Q2TAA2 248 aaPredicted RBP17.18■□□□□ 0.34
VPS28-208ENST00000527797 C1orf229Q6ZS94 237 aaPredicted RBP17.18■□□□□ 0.34
VPS28-208ENST00000527797 SPAG16Q8N0X2 631 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 KIR3DL3Q8N743 410 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 DRAXINQ8NBI3 349 aaPredicted RBP17.18■□□□□ 0.34
VPS28-208ENST00000527797 OR10X1Q8NGY0 326 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 CD300LFQ8TDQ1 290 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 ZNF251Q9BRH9 671 aa17.18■□□□□ 0.34
VPS28-208ENST00000527797 MALRD1Q5VYJ5 2156 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 IGHV2-26A0A0B4J1V2 119 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 G3V3Q6 166 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 VDAC1P21796 283 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 FGL1Q08830 312 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 CLEC12BQ2HXU8 276 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 OR2B11Q5JQS5 317 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 NCR3LG1Q68D85 454 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 TNFRSF14Q92956 283 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 ADTRPQ96IZ2 230 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 CLEC7AQ9BXN2 247 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 GSKIPQ9P0R6 139 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 ZNRD1Q9P1U0 126 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 PRELID3BQ9Y3B1 194 aa17.17■□□□□ 0.34
VPS28-208ENST00000527797 AKAP6Q13023 2319 aa17.16■□□□□ 0.34
VPS28-208ENST00000527797 IGHV4-61A0A0C4DH41 118 aa17.16■□□□□ 0.34
VPS28-208ENST00000527797 THBS3P49746 956 aa17.16■□□□□ 0.34
VPS28-208ENST00000527797 LINC00205P59089 165 aa17.16■□□□□ 0.34
VPS28-208ENST00000527797 HIST2H2BCQ6DN03 193 aa17.16■□□□□ 0.34
VPS28-208ENST00000527797 C1orf122Q6ZSJ8 110 aa17.16■□□□□ 0.34
VPS28-208ENST00000527797 Q8N7P7 452 aa17.16■□□□□ 0.34
VPS28-208ENST00000527797 PPP1R1CQ8WVI7 109 aa17.16■□□□□ 0.34
VPS28-208ENST00000527797 TMEM186Q96B77 213 aa17.16■□□□□ 0.34
VPS28-208ENST00000527797 DCHS2Q6V1P9 2916 aa17.15■□□□□ 0.34
VPS28-208ENST00000527797 IGHV2-70DA0A0C4DH43 119 aa17.15■□□□□ 0.34
VPS28-208ENST00000527797 IGKV1-39P01597 117 aa17.15■□□□□ 0.34
VPS28-208ENST00000527797 IGKV1D-39P04432 117 aa17.15■□□□□ 0.34
VPS28-208ENST00000527797 BRWD1-AS2P59051 145 aa17.15■□□□□ 0.34
VPS28-208ENST00000527797 DEFB113Q30KQ7 82 aa17.15■□□□□ 0.34
VPS28-208ENST00000527797 OR11H4Q8NGC9 324 aa17.15■□□□□ 0.34
VPS28-208ENST00000527797 OR13D1Q8NGV5 346 aa17.15■□□□□ 0.34
VPS28-208ENST00000527797 RAMP3O60896 148 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 FCGR3BO75015 233 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 SLC25A16P16260 332 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 IL3RAP26951 378 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 KIR2DS2P43631 304 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 PAX2Q02962 417 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 ZNF816Q0VGE8 651 aaPredicted RBP17.14■□□□□ 0.33
VPS28-208ENST00000527797 LRRC37A5PQ49AS3 106 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 ZNF833PQ6ZTB9 187 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 LRRC75A-AS1Q8N1F1 130 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 ZBTB8BQ8NAP8 495 aaPredicted RBP17.14■□□□□ 0.33
VPS28-208ENST00000527797 RNASE11Q8TAA1 199 aaKnown RBP17.14■□□□□ 0.33
VPS28-208ENST00000527797 SPIN2AQ99865 258 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 SPIN2BQ9BPZ2 258 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 KPTNQ9Y664 436 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 YLPM1P49750 1951 aaKnown RBP17.14■□□□□ 0.33
VPS28-208ENST00000527797 USP9YO00507 2555 aaPredicted RBP17.14■□□□□ 0.33
VPS28-208ENST00000527797 ATG12O94817 140 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 PRTN3P24158 256 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 COX7A1P24310 79 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 PSMB6P28072 239 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 DLX1P56177 255 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms