RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 MCUBQ9NWR8 336 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 ANK3Q12955 4377 aaKnown RBP12.07□□□□□ -0.48
NUP54-213ENST00000513352 LINC00854A0A1B0GVQ3 168 aa12.06□□□□□ -0.48
NUP54-213ENST00000513352 DISC1C4P0D8 188 aa12.06□□□□□ -0.48
NUP54-213ENST00000513352 CD74P04233 296 aa12.06□□□□□ -0.48
NUP54-213ENST00000513352 PGAM2P15259 253 aa12.06□□□□□ -0.48
NUP54-213ENST00000513352 CD24P25063 80 aa12.06□□□□□ -0.48
NUP54-213ENST00000513352 IER3P46695 156 aa12.06□□□□□ -0.48
NUP54-213ENST00000513352 HES1Q14469 280 aa12.06□□□□□ -0.48
NUP54-213ENST00000513352 BAK1Q16611 211 aa12.06□□□□□ -0.48
NUP54-213ENST00000513352 ZNF833PQ6ZTB9 187 aa12.06□□□□□ -0.48
NUP54-213ENST00000513352 ZNF645Q8N7E2 425 aa12.06□□□□□ -0.48
NUP54-213ENST00000513352 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.06□□□□□ -0.48
NUP54-213ENST00000513352 FAM216AQ8WUB2 273 aa12.06□□□□□ -0.48
NUP54-213ENST00000513352 GHITMQ9H3K2 345 aa12.06□□□□□ -0.48
NUP54-213ENST00000513352 SDHAF2Q9NX18 166 aa12.06□□□□□ -0.48
NUP54-213ENST00000513352 SLC22A5O76082 557 aa12.05□□□□□ -0.48
NUP54-213ENST00000513352 PPP5CP53041 499 aa12.05□□□□□ -0.48
NUP54-213ENST00000513352 HILS1P60008 231 aa12.05□□□□□ -0.48
NUP54-213ENST00000513352 SRSF2Q01130 221 aaKnown RBP12.05□□□□□ -0.48
NUP54-213ENST00000513352 FAM71F2Q6NXP2 309 aa12.05□□□□□ -0.48
NUP54-213ENST00000513352 DHRS11Q6UWP2 260 aa12.05□□□□□ -0.48
NUP54-213ENST00000513352 GLDNQ6ZMI3 551 aaPredicted RBP12.05□□□□□ -0.48
NUP54-213ENST00000513352 ARRDC1Q8N5I2 433 aa12.05□□□□□ -0.48
NUP54-213ENST00000513352 DRAXINQ8NBI3 349 aaPredicted RBP12.05□□□□□ -0.48
NUP54-213ENST00000513352 OR5R1Q8NH85 324 aa12.05□□□□□ -0.48
NUP54-213ENST00000513352 MOB3AQ96BX8 217 aa12.05□□□□□ -0.48
NUP54-213ENST00000513352 SDHCQ99643 169 aaPredicted RBP12.05□□□□□ -0.48
NUP54-213ENST00000513352 FXYD6Q9H0Q3 95 aa12.05□□□□□ -0.48
NUP54-213ENST00000513352 PRDM13Q9H4Q3 707 aa12.05□□□□□ -0.48
NUP54-213ENST00000513352 ESM1Q9NQ30 184 aa12.05□□□□□ -0.48
NUP54-213ENST00000513352 CCL28Q9NRJ3 127 aa12.05□□□□□ -0.48
NUP54-213ENST00000513352 NIPBLQ6KC79 2804 aaeCLIP12.04□□□□□ -0.48
NUP54-213ENST00000513352 VGLL3A8MV65 326 aa12.04□□□□□ -0.48
NUP54-213ENST00000513352 VENTXO95231 258 aa12.04□□□□□ -0.48
NUP54-213ENST00000513352 SNRNP70P08621 437 aaKnown RBP12.04□□□□□ -0.48
NUP54-213ENST00000513352 IL7P13232 177 aa12.04□□□□□ -0.48
NUP54-213ENST00000513352 KLF9Q13886 244 aaPredicted RBP12.04□□□□□ -0.48
NUP54-213ENST00000513352 SLC9A3R2Q15599 337 aa12.04□□□□□ -0.48
NUP54-213ENST00000513352 AANATQ16613 207 aa12.04□□□□□ -0.48
NUP54-213ENST00000513352 ZNF660Q6AZW8 331 aaPredicted RBP12.04□□□□□ -0.48
NUP54-213ENST00000513352 TMEM219Q86XT9 240 aa12.04□□□□□ -0.48
NUP54-213ENST00000513352 C5orf30Q96GV9 206 aa12.04□□□□□ -0.48
NUP54-213ENST00000513352 NABP2Q9BQ15 211 aa12.04□□□□□ -0.48
NUP54-213ENST00000513352 ZNF251Q9BRH9 671 aa12.04□□□□□ -0.48
NUP54-213ENST00000513352 POMT1Q9Y6A1 747 aa12.04□□□□□ -0.48
NUP54-213ENST00000513352 SVEP1Q4LDE5 3571 aa12.04□□□□□ -0.48
NUP54-213ENST00000513352 A0A0A6YYJ9 748 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 OR5H14A6NHG9 310 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 H7C2Y5 167 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 TNFSF12O43508 249 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 IGKV1D-33P01593 117 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 IGKV1-33P01594 117 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 APOA2P02652 100 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 FAM106CPP0CH98 169 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 LSAMPQ13449 338 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 HNF4GQ14541 408 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 TUSC1Q2TAM9 212 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 ZDHHC22Q8N966 263 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 OR51S1Q8NGJ8 323 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 CFHR4Q92496 578 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 CCDC32Q9BV29 185 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 HRASLSQ9HDD0 168 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 SCP2D1Q9UJQ7 156 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 VPREB3Q9UKI3 123 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 JMJD1CQ15652 2540 aa12.03□□□□□ -0.48
NUP54-213ENST00000513352 CT45A6P0DMU7 189 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 CT45A5P0DMU8 189 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 CT45A7P0DMV0 189 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 TMEM11P17152 192 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 S100GP29377 79 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 CD40LGP29965 261 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 THBS3P49746 956 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 DYNLT3P51808 116 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 LINC00205P59089 165 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 UBA52P62987 128 aaKnown RBP12.02□□□□□ -0.49
NUP54-213ENST00000513352 CBX3Q13185 183 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 PHLDA2Q53GA4 152 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 LPCAT3Q6P1A2 487 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 ZNF818PQ6ZRF7 136 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 TMEM86BQ8N661 226 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 TERB2Q8NHR7 220 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 TCTEX1D2Q8WW35 142 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 BORCS5Q969J3 196 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 RBMXL1Q96E39 390 aaKnown RBP12.02□□□□□ -0.49
NUP54-213ENST00000513352 PRRT1Q99946 306 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 CHIAQ9BZP6 476 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 PITPNC1Q9UKF7 332 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 GAB2Q9UQC2 676 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 TCF19Q9Y242 345 aa12.02□□□□□ -0.49
NUP54-213ENST00000513352 SETD2Q9BYW2 2564 aaPredicted RBP12.02□□□□□ -0.49
NUP54-213ENST00000513352 CENPXA8MT69 81 aa12.01□□□□□ -0.49
NUP54-213ENST00000513352 TRIM77I1YAP6 450 aa12.01□□□□□ -0.49
NUP54-213ENST00000513352 PROP1O75360 226 aa12.01□□□□□ -0.49
NUP54-213ENST00000513352 ZNF735P0CB33 412 aa12.01□□□□□ -0.49
NUP54-213ENST00000513352 CD1BP29016 333 aa12.01□□□□□ -0.49
NUP54-213ENST00000513352 ABCA11PQ4W5N1 156 aa12.01□□□□□ -0.49
NUP54-213ENST00000513352 OR2B11Q5JQS5 317 aa12.01□□□□□ -0.49
NUP54-213ENST00000513352 IDO2Q6ZQW0 420 aa12.01□□□□□ -0.49
NUP54-213ENST00000513352 KCTD9Q7L273 389 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms