RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CEBPDP49716 269 aaPredicted RBP9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 HOXA4Q00056 320 aaPredicted RBP9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 UNC119Q13432 240 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 MYPOPQ86VE0 399 aaPredicted RBP9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 OR4X1Q8NH49 305 aa9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TNRC18O15417 2968 aaPredicted RBP9.24□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 C19orf67A6NJJ6 358 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ERVFRD-1P60508 538 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 AADACL3Q5VUY0 350 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 OR2Z1Q8NG97 314 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PP6455Q8WZ26 134 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 MRPL13Q9BYD1 178 aaKnown RBP9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PRO3102Q9H379 93 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 DIRC3C9JPN6 131 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 CTSDP07339 412 aaPredicted RBP9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 CELA3BP08861 270 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 UBE2G2P60604 165 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 FAM27BQ5VT28 67 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 UHRF2Q96PU4 802 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ALKBH7Q9BT30 221 aaPredicted RBP9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ZNF665Q9H7R5 613 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PLEKHA3Q9HB20 300 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SLC35D1Q9NTN3 355 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 GNG12Q9UBI6 72 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 A0A087WWC5 75 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 MKRN2OSH3BPM6 223 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 FCN1O00602 326 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 GZMBP10144 247 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 BCL3P20749 454 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 THBS4P35443 961 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 Q5PR19 223 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 UNQ6494/PRO21346Q6UXR6 183 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 OR10V1Q8NGI7 309 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ADGRG7Q96K78 797 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 GINS3Q9BRX5 216 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 EGLN1Q9GZT9 426 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 LPAR5Q9H1C0 372 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ZNF703Q9H7S9 590 aaPredicted RBP9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 AURKAIP1Q9NWT8 199 aaPredicted RBP9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PROCRQ9UNN8 238 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TLN2Q9Y4G6 2542 aa9.23□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 HSBP1O75506 76 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SRP19P09132 144 aaKnown RBP9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 DTYMKP23919 212 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 MSMO1Q15800 293 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 GAL3ST2Q9H3Q3 398 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 RAB29O14966 203 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SYNGR1O43759 233 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 MELTFP08582 738 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 BCL2P10415 239 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 NTF4P34130 210 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PDLIM3Q53GG5 364 aaPredicted RBP9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 VWA1Q6PCB0 445 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 CPEB3Q8NE35 698 aaKnown RBP9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 OR13G1Q8NGZ3 307 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 KCNIP1Q9NZI2 227 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 LOC400499M0QZD8 3231 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 LOC102723996A0A087X1L8 192 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SPINK4O60575 86 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TDGF1P3P51864 188 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TMEM267Q0VDI3 215 aaPredicted RBP9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ZNF154Q13106 437 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 OR8B8Q15620 311 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 FADS6Q8N9I5 356 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ZIC4Q8N9L1 334 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 APOBEC3DQ96AK3 386 aaPredicted RBP9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 WNT5BQ9H1J7 359 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ASPMQ8IZT6 3477 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TMEM210A6NLX4 147 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ADAM20O43506 726 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 WISP2O76076 250 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 OR4A8P0C604 315 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 HOXA6P31267 233 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 VAX1Q5SQQ9 334 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PECRQ9BY49 303 aa9.22□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 DOCK11Q5JSL3 2073 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SETD2Q9BYW2 2564 aaPredicted RBP9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 IGKV1-9A0A0C4DH69 117 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 LDLRAD4O15165 306 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PRAMEF6Q5VXH4 476 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 OR4A47Q6IF82 309 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 GFRALQ6UXV0 394 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 LIAT1Q6ZQX7 453 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 CALHM1Q8IU99 346 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 OR11L1Q8NGX0 322 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 AQP3Q92482 292 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PINX1Q96BK5 328 aaKnown RBP9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 SLC35E1Q96K37 410 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 NEU1Q99519 415 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ACTR3CQ9C0K3 210 aaPredicted RBP9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 UQCR10Q9UDW1 63 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 NAT8BQ9UHF3 227 aa9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 FOXD3Q9UJU5 478 aaPredicted RBP9.21□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 HRASP01112 189 aa9.21□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ZNF735P0CB33 412 aa9.21□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 RNFT1Q5M7Z0 435 aa9.21□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 MRGPRGQ86SM5 289 aa9.21□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 PTX4Q96A99 478 aa9.21□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 SLC25A22Q9H936 323 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms