RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 ZFAND1Q8TCF1 268 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 FAM216AQ8WUB2 273 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 C17orf50Q8WW18 174 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 LHX4Q969G2 390 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 RBMXL1Q96E39 390 aaKnown RBP4.82□□□□□ -1.64
USP39-213ENST00000467885 MALSU1Q96EH3 234 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 SCGB3A2Q96PL1 93 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 GPHA2Q96T91 129 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 SMR3AQ99954 134 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 CLEC7AQ9BXN2 247 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 IFI27L2Q9H2X8 130 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 DPAGT1Q9H3H5 408 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 SDHAF2Q9NX18 166 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 DPM3Q9P2X0 92 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 NUBP2Q9Y5Y2 271 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 NOTCH2Q04721 2471 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 OTOGQ6ZRI0 2925 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 TEX15Q9BXT5 2789 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 BAHCC1Q9P281 2608 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 KIAA2026Q5HYC2 2103 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 TRAV6A0A075B6T7 132 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 NBPF19A0A087WUL8 3843 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 IGHV1-69DA0A0B4J2H0 117 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 A0A1W2PRD5 423 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 A0A1W2PRF3 423 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 A0A1W2PRM7 423 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 LINC00473A8K010 186 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 INMT-MINDY4F8WBC2 141 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 TOR1AO14656 332 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 HSD17B6O14756 317 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 RAB29O14966 203 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 CD5LO43866 347 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 SLC22A5O76082 557 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 LY6G6DO95868 133 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 FSHBP01225 129 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 IGHV1-69P01742 117 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 IL5P05113 134 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 IGHV4-38-2P0DP08 117 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 FOSL1P15407 271 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 ANXA7P20073 488 aaKnown RBP4.81□□□□□ -1.64
USP39-213ENST00000467885 COX7A1P24310 79 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 ECI1P42126 302 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 GNG10P50151 68 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 RAB7AP51149 207 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 RND3P61587 244 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 BAMBIQ13145 260 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 RBMS2Q15434 407 aaKnown RBP4.81□□□□□ -1.64
USP39-213ENST00000467885 HLA-DRB5Q30154 266 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 MIDNQ504T8 468 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 RPL39P5Q59GN2 51 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 PLET1Q6UQ28 207 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 ZNF833PQ6ZTB9 187 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 KCTD9Q7L273 389 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 LHFPL4Q7Z7J7 247 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 PDZD9Q8IXQ8 264 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 SLC38A6Q8IZM9 456 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 ZNF645Q8N7E2 425 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 DRAXINQ8NBI3 349 aaPredicted RBP4.81□□□□□ -1.64
USP39-213ENST00000467885 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.81□□□□□ -1.64
USP39-213ENST00000467885 OR2AK2Q8NG84 335 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 PIFOQ8TCI5 191 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 GLYATL2Q8WU03 294 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 SECTM1Q8WVN6 248 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 DDB2Q92466 427 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 ZNF486Q96H40 463 aaPredicted RBP4.81□□□□□ -1.64
USP39-213ENST00000467885 EAF1Q96JC9 268 aaPredicted RBP4.81□□□□□ -1.64
USP39-213ENST00000467885 RITA1Q96K30 269 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 C18orf12Q96KH6 178 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 FXYD6Q9H0Q3 95 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 MEGF9Q9H1U4 602 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 PIPOXQ9P0Z9 390 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 COPZ2Q9P299 210 aa4.81□□□□□ -1.64
USP39-213ENST00000467885 ITPR3Q14573 2671 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 SAA2-SAA4A0A096LPE2 208 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 A0A0A6YYJ9 748 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 A0A0B4J293 547 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 TEX13DA0A0J9YY54 714 aaPredicted RBP4.8□□□□□ -1.64
USP39-213ENST00000467885 C9orf170A2RU37 121 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 CRYM-AS1A6NIL9 109 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 FAM90A9PA6NNJ1 464 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 LEUTXA8MZ59 168 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 GPR31O00270 319 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 ARPC1BO15143 372 aaKnown RBP4.8□□□□□ -1.64
USP39-213ENST00000467885 GAPDHP04406 335 aaKnown RBP4.8□□□□□ -1.64
USP39-213ENST00000467885 ARG1P05089 322 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 OR4E1P0C645 316 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 SAA2P0DJI9 122 aaPredicted RBP4.8□□□□□ -1.64
USP39-213ENST00000467885 CD99P14209 185 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 PGAM2P15259 253 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 AKR1C4P17516 323 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 F2RP25116 425 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 PAX6P26367 422 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 HTR1DP28221 377 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 DUTP33316 252 aaKnown RBP4.8□□□□□ -1.64
USP39-213ENST00000467885 PIGPP57054 158 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 RAB25P57735 213 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 BPIFB3P59826 476 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 HERV-K104P61576 105 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 HABP2Q14520 560 aaPredicted RBP4.8□□□□□ -1.64
USP39-213ENST00000467885 SP6Q3SY56 376 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms