RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 FBXW9Q5XUX1 488 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 ASCL5Q7RTU5 278 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 YBX2Q9Y2T7 364 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 LOC389332A0A1B0GUA5 103 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 CFDP00746 253 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 ZNF137PP52743 207 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 MFAP2P55001 183 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FGF12P61328 243 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 SF3B6Q9Y3B4 125 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A10PA6NDY2 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A18PA6NE21 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A16PA6NEW6 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A20PA6NIJ5 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A8PA6NJQ4 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A7PA6NKC0 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A22PA8MWA6 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A12PA8MX19 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A5PA8MXJ8 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A23PA8MXZ1 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 NPIPB7O75200 414 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A15PP0C7V4 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A13PP0C7W8 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A14PP0C7W9 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A24PP0C7X0 464 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 ZNF735P0CB33 412 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 TWIST1Q15672 202 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 ST6GALNAC3Q8NDV1 305 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 SNRNP40Q96DI7 357 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 OR8B2Q96RD0 313 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 BEX4Q9NWD9 120 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 AURKAIP1Q9NWT8 199 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 A8MWL6 223 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 UPK3AO75631 287 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 P2RX4Q99571 388 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 TMEM208Q9BTX3 173 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 RSPO3Q9BXY4 272 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 COA4Q9NYJ1 87 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 INSIG2Q9Y5U4 225 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 SFTPCP11686 197 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FUT5Q11128 374 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 PAXXQ9BUH6 204 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 HEXA-AS1Q9H8Q6 139 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 CYSLTR1Q9Y271 337 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM90A27PA6NNH2 459 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 CCL4P13236 92 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 PPP1CCP36873 323 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 SNAI3Q3KNW1 292 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 CEACAM21Q3KPI0 293 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 HIKESHIQ53FT3 197 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 UNQ9370/PRO34162Q6UXP9 181 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 C1orf174Q8IYL3 243 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 OR4C13Q8NGP0 309 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 OR5R1Q8NH85 324 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 PXMP4Q9Y6I8 212 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 SCN3AQ9NY46 2000 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 DLEC1Q9Y238 1755 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 LDLRAD4O15165 306 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 RBFOX2O43251 390 aaKnown RBP eCLIP8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 DNAL4O96015 105 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 HKR1P10072 659 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 C3AR1Q16581 482 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 GBGT1Q8N5D6 347 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 AQP3Q92482 292 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 LGALS3P17931 250 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 SFTPA2Q8IWL1 248 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 PCGF1Q9BSM1 259 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 OR51B2Q9Y5P1 312 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 IGLV1-36A0A0B4J1U3 117 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 SRSF4Q08170 494 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 ATOH7Q8N100 152 aa8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 MARS2Q96GW9 593 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-203ENST00000396595 TRGC1P0CF51 173 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 SLC35B1P78383 322 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM181AQ8N9Y4 354 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 MRPL18Q9H0U6 180 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 ZDHHC8Q9ULC8 765 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 IGKV1-8A0A0C4DH67 115 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 A0A0J9YW62 118 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 IGHV5-10-1A0A0J9YXX1 117 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 TSPAN2O60636 221 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 C1QL1O75973 258 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 WNT5AP41221 380 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 NHLRC3Q5JS37 347 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 MRPL52Q86TS9 123 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 MDP1Q86V88 176 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 AMELYQ99218 206 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 NDUFAF3Q9BU61 184 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 TLNRD1Q9H1K6 362 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 MS4A5Q9H3V2 200 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 HYPMO75409 117 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 TMEM249Q2WGJ8 235 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 OR11H4Q8NGC9 324 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM222BQ8WU58 562 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 TNFRSF14Q92956 283 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 HIST1H2BAQ96A08 127 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 KCNK17Q96T54 332 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 TRAV8-4A0A0B4J246 113 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 A0A1W2PP11 408 aa8.87□□□□□ -0.99
LIMCH1-203ENST00000396595 MGST3O14880 152 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms