RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 IL36GQ9NZH8 169 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 MUC22E2RYF6 1773 aaPredicted RBP13.72□□□□□ -0.21
PCDH1-203ENST00000394536 TRANK1O15050 2925 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 LRRC3CA6NJW4 275 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 SPSB3Q6PJ21 355 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 C20orf204Q6ZNR8 217 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 Q8IYB0 196 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 OR2Z1Q8NG97 314 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 K7ESF4 209 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 WNT9BO14905 357 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 NDUFS6O75380 124 aaKnown RBP13.72□□□□□ -0.21
PCDH1-203ENST00000394536 HERPUD1Q15011 391 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 DCAF10Q5QP82 559 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 Q6ZRM9 215 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 TRAV38-1A0A0B4J264 116 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 A0A1B0GV90 55 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A10PA6NDY2 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A18PA6NE21 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A16PA6NEW6 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A20PA6NIJ5 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A8PA6NJQ4 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A7PA6NKC0 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A22PA8MWA6 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A12PA8MX19 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A5PA8MXJ8 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A23PA8MXZ1 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 MT-CO2P00403 227 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A15PP0C7V4 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A13PP0C7W8 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A14PP0C7W9 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 FAM90A24PP0C7X0 464 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 ZDHHC16Q969W1 377 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 GYPAP02724 150 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 RPL29P47914 159 aaKnown RBP13.71□□□□□ -0.21
PCDH1-203ENST00000394536 HIST1H3AP68431 136 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 TMEM178AQ8NBL3 297 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 PROK2Q9HC23 129 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 PRDM6Q9NQX0 595 aa13.71□□□□□ -0.21
PCDH1-203ENST00000394536 TRAV24A0A0B4J272 114 aa13.71□□□□□ -0.22
PCDH1-203ENST00000394536 CTXND1A0A1B0GTU2 59 aa13.71□□□□□ -0.22
PCDH1-203ENST00000394536 NDUFB4O95168 129 aa13.71□□□□□ -0.22
PCDH1-203ENST00000394536 FBXW9Q5XUX1 488 aa13.71□□□□□ -0.22
PCDH1-203ENST00000394536 OR5P3Q8WZ94 311 aa13.71□□□□□ -0.22
PCDH1-203ENST00000394536 PARLQ9H300 379 aa13.71□□□□□ -0.22
PCDH1-203ENST00000394536 LAMA1P25391 3075 aa13.71□□□□□ -0.22
PCDH1-203ENST00000394536 PTPRSQ13332 1948 aa13.7□□□□□ -0.22
PCDH1-203ENST00000394536 S1PR2O95136 353 aa13.7□□□□□ -0.22
PCDH1-203ENST00000394536 SOD3P08294 240 aa13.7□□□□□ -0.22
PCDH1-203ENST00000394536 NMSQ5H8A3 153 aa13.7□□□□□ -0.22
PCDH1-203ENST00000394536 TIPARPQ7Z3E1 657 aaKnown RBP13.7□□□□□ -0.22
PCDH1-203ENST00000394536 S1PR3Q99500 378 aa13.7□□□□□ -0.22
PCDH1-203ENST00000394536 KLF2Q9Y5W3 355 aaPredicted RBP13.7□□□□□ -0.22
PCDH1-203ENST00000394536 FOXI3A8MTJ6 420 aaPredicted RBP13.7□□□□□ -0.22
PCDH1-203ENST00000394536 HBZP02008 142 aa13.7□□□□□ -0.22
PCDH1-203ENST00000394536 TNFRSF9Q07011 255 aa13.7□□□□□ -0.22
PCDH1-203ENST00000394536 WDR61Q9GZS3 305 aaKnown RBP13.7□□□□□ -0.22
PCDH1-203ENST00000394536 CISD1Q9NZ45 108 aaKnown RBP13.7□□□□□ -0.22
PCDH1-203ENST00000394536 CRIM1Q9NZV1 1036 aa13.7□□□□□ -0.22
PCDH1-203ENST00000394536 OR7C2O60412 319 aa13.7□□□□□ -0.22
PCDH1-203ENST00000394536 DDTP30046 118 aa13.7□□□□□ -0.22
PCDH1-203ENST00000394536 TMEM42Q69YG0 159 aa13.7□□□□□ -0.22
PCDH1-203ENST00000394536 ZNF525Q8N782 197 aa13.7□□□□□ -0.22
PCDH1-203ENST00000394536 IL17BQ9UHF5 180 aa13.7□□□□□ -0.22
PCDH1-203ENST00000394536 THBS3P49746 956 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 ATP1A1-AS1Q5TC04 95 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 PLPPR1Q8TBJ4 325 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 SSC4DQ8WTU2 575 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 CA5BP1Q8WTZ4 195 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 MS4A10Q96PG2 267 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 CTDSP1Q9GZU7 261 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 RPH3ALQ9UNE2 315 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 IGKV1-6A0A0C4DH72 117 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 MPLP40238 635 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 ZNF718Q3SXZ3 478 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 GATAD1Q8WUU5 269 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 R3HDM4Q96D70 268 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 PAX6P26367 422 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 PKIAP61925 76 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 DPPA3Q6W0C5 159 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 VKORC1L1Q8N0U8 176 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 LRRC29Q8WV35 223 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 SH3BGRL2Q9UJC5 107 aa13.69□□□□□ -0.22
PCDH1-203ENST00000394536 ZNF729A6NN14 1252 aaPredicted RBP13.68□□□□□ -0.22
PCDH1-203ENST00000394536 GATCO43716 136 aaKnown RBP13.68□□□□□ -0.22
PCDH1-203ENST00000394536 CELA3BP08861 270 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 RNF224P0DH78 156 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 SMIM21Q3B7S5 101 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 ZNF766Q5HY98 468 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 KDF1Q8NAX2 398 aaPredicted RBP13.68□□□□□ -0.22
PCDH1-203ENST00000394536 SGMS2Q8NHU3 365 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 TAAR6Q96RI8 345 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 ABCA4P78363 2273 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 EML6Q6ZMW3 1958 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 KIAA1324LA8MWY0 1029 aaPredicted RBP13.68□□□□□ -0.22
PCDH1-203ENST00000394536 NAPSAO96009 420 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 TOMM20LQ6UXN7 152 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 SDF2L1Q9HCN8 221 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 SPRY3O43610 288 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 RAMP3O60896 148 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 SNRPCP09234 159 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms