RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TGIF2LYQ8IUE0 185 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 SVBPQ8N300 66 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 CORO2AQ92828 525 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 RAB1CQ92928 201 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 GINS3Q9BRX5 216 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 GAL3ST2Q9H3Q3 398 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 CCL28Q9NRJ3 127 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 CALYQ9NYX4 217 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 GNG12Q9UBI6 72 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 KCNS2Q9ULS6 477 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 CARHSP1Q9Y2V2 147 aaKnown RBP15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 PKDREJQ9NTG1 2253 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 FAM208BQ5VWN6 2430 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 KALRNO60229 2985 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 IGKV1D-13A0A0B4J2D9 117 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 F2RL2O00254 374 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 ATG12O94817 140 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 IGKV1-13P0DP09 117 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 SSTR5P35346 364 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 NKX2-1P43699 371 aaPredicted RBP15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 CAV2P51636 162 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 BTN1A1Q13410 526 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 PXDC1Q5TGL8 231 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 RAB39BQ96DA2 213 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 NARS2Q96I59 477 aaKnown RBP15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 SLC25A31Q9H0C2 315 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 LINC00312Q9Y6C7 94 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 DSCAMO60469 2012 aa15.09■□□□□ 0.01
CCDC88C-203ENST00000389856 KBTBD11-OT1A0A1B0GTJ5 212 aa15.08■□□□□ 0
CCDC88C-203ENST00000389856 GPR37O15354 613 aa15.08■□□□□ 0
CCDC88C-203ENST00000389856 MED6O75586 246 aa15.08■□□□□ 0
CCDC88C-203ENST00000389856 SOD3P08294 240 aa15.08■□□□□ 0
CCDC88C-203ENST00000389856 C5orf24Q7Z6I8 188 aa15.08■□□□□ 0
CCDC88C-203ENST00000389856 DMBX1Q8NFW5 382 aa15.08■□□□□ 0
CCDC88C-203ENST00000389856 OR10A7Q8NGE5 316 aa15.08■□□□□ 0
CCDC88C-203ENST00000389856 OR52L2PQ8NGH6 319 aa15.08■□□□□ 0
CCDC88C-203ENST00000389856 C11orf1Q9H5F2 150 aa15.08■□□□□ 0
CCDC88C-203ENST00000389856 CLN8Q9UBY8 286 aa15.08■□□□□ 0
CCDC88C-203ENST00000389856 LAMP3Q9UQV4 416 aa15.08■□□□□ 0
CCDC88C-203ENST00000389856 RCL1Q9Y2P8 373 aaKnown RBP15.08■□□□□ 0
CCDC88C-203ENST00000389856 STRAPQ9Y3F4 350 aaKnown RBP15.08■□□□□ 0
CCDC88C-203ENST00000389856 TNFRSF13BO14836 293 aaPredicted RBP15.07■□□□□ 0
CCDC88C-203ENST00000389856 YPEL1O60688 119 aa15.07■□□□□ 0
CCDC88C-203ENST00000389856 C1QL1O75973 258 aa15.07■□□□□ 0
CCDC88C-203ENST00000389856 OR8U9P0C7N5 309 aa15.07■□□□□ 0
CCDC88C-203ENST00000389856 F2RP25116 425 aa15.07■□□□□ 0
CCDC88C-203ENST00000389856 ZNF273Q14593 569 aa15.07■□□□□ 0
CCDC88C-203ENST00000389856 NMSQ5H8A3 153 aa15.07■□□□□ 0
CCDC88C-203ENST00000389856 BTNL8Q6UX41 500 aa15.07■□□□□ 0
CCDC88C-203ENST00000389856 ZNF645Q8N7E2 425 aa15.07■□□□□ 0
CCDC88C-203ENST00000389856 OR52M1Q8NGK5 317 aa15.07■□□□□ 0
CCDC88C-203ENST00000389856 OR8U1Q8NH10 309 aa15.07■□□□□ 0
CCDC88C-203ENST00000389856 LYPD6BQ8NI32 183 aa15.07■□□□□ 0
CCDC88C-203ENST00000389856 UBALD1Q8TB05 177 aa15.07■□□□□ 0
CCDC88C-203ENST00000389856 YPEL2Q96QA6 119 aa15.07■□□□□ 0
CCDC88C-203ENST00000389856 LIN7CQ9NUP9 197 aaKnown RBP15.07■□□□□ 0
CCDC88C-203ENST00000389856 ITGB1BP1O14713 200 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 PGLYRP1O75594 196 aaPredicted RBP15.06■□□□□ 0
CCDC88C-203ENST00000389856 SELLP14151 372 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 DAOP14920 347 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 RAB7AP51149 207 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 DEFA5Q01523 94 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 TLE4Q04727 773 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 ZNF266Q14584 549 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 OR2C3Q8N628 320 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 RFESDQ8TAC1 157 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 TSNAXQ99598 290 aaKnown RBP15.06■□□□□ 0
CCDC88C-203ENST00000389856 SEC11CQ9BY50 192 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 NKX6-2Q9C056 277 aaPredicted RBP15.06■□□□□ 0
CCDC88C-203ENST00000389856 PLEKHF2Q9H8W4 249 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 CFAP46Q8IYW2 2715 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 KIAA2026Q5HYC2 2103 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 TRBV23-1A0A0A0MS06 115 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 LOC105371267A0A1B0GV96 52 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 SPP1P10451 314 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 COL8A2P25067 703 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 RPL31P62899 125 aaKnown RBP15.06■□□□□ 0
CCDC88C-203ENST00000389856 ID3Q02535 119 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 BAXQ07812 192 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 CATR1Q13166 79 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 FAM219AQ8IW50 185 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 DCTN5Q9BTE1 182 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 LINC00574Q9H8X3 128 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 CHODLQ9H9P2 273 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 MIOXQ9UGB7 285 aa15.06■□□□□ 0
CCDC88C-203ENST00000389856 A0A1B0GU03 582 aa15.05■□□□□ -0
CCDC88C-203ENST00000389856 A0A1W2PPH5 198 aa15.05■□□□□ -0
CCDC88C-203ENST00000389856 PITX3O75364 302 aa15.05■□□□□ -0
CCDC88C-203ENST00000389856 IGHV2-70P01814 119 aa15.05■□□□□ -0
CCDC88C-203ENST00000389856 CGB3P0DN86 165 aa15.05■□□□□ -0
CCDC88C-203ENST00000389856 CGB7P0DN87 165 aa15.05■□□□□ -0
CCDC88C-203ENST00000389856 PPP1CCP36873 323 aaKnown RBP15.05■□□□□ -0
CCDC88C-203ENST00000389856 VAMP2P63027 116 aa15.05■□□□□ -0
CCDC88C-203ENST00000389856 TMEM155Q4W5P6 130 aa15.05■□□□□ -0
CCDC88C-203ENST00000389856 TCTEX1D1Q8N7M0 179 aa15.05■□□□□ -0
CCDC88C-203ENST00000389856 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.05■□□□□ -0
CCDC88C-203ENST00000389856 LYRM2Q9NU23 88 aaPredicted RBP15.05■□□□□ -0
CCDC88C-203ENST00000389856 UQCC1Q9NVA1 299 aa15.05■□□□□ -0
CCDC88C-203ENST00000389856 IDI2-AS1Q9NZ38 188 aa15.05■□□□□ -0
CCDC88C-203ENST00000389856 ABCA4P78363 2273 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms