RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 LIN54Q6MZP7 749 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 TPRA1Q86W33 373 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 ZNF695Q8IW36 515 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 KCTD7Q96MP8 289 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 DUX3Q96PT4 197 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 TOLLIPQ9H0E2 274 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 OR51J1Q9H342 316 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 ZNF580Q9UK33 172 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 WSB1Q9Y6I7 421 aa14.39□□□□□ -0.11
CLN3-202ENST00000355477 G3V318 75 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 BET1O15155 118 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 ATP6V0E1O15342 81 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 CLEC2LP0C7M8 214 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 VDAC1P21796 283 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 MC5RP33032 325 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 SDC2P34741 201 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 NEDD8Q15843 81 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 CXorf66Q5JRM2 361 aaPredicted RBP14.38□□□□□ -0.11
CLN3-202ENST00000355477 RCC1LQ96I51 464 aaKnown RBP14.38□□□□□ -0.11
CLN3-202ENST00000355477 RAX2Q96IS3 184 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 P2RX4Q99571 388 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 CHCHD6Q9BRQ6 235 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 CABLES2Q9BTV7 478 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 FBXL15Q9H469 300 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 NECAP2Q9NVZ3 263 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 AURKAIP1Q9NWT8 199 aaPredicted RBP14.38□□□□□ -0.11
CLN3-202ENST00000355477 DAPK2Q9UIK4 370 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 ZNF221Q9UK13 617 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 WASHC3Q9Y3C0 194 aa14.38□□□□□ -0.11
CLN3-202ENST00000355477 IGKV1D-8A0A087WSZ0 117 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 TRBV6-7A0A0A0MS04 114 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 H7C2Y5 167 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 FCN1O00602 326 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 RRHO14718 337 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 ELANEP08246 267 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 PSMB8P28062 276 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 PPIFP30405 207 aaKnown RBP14.37□□□□□ -0.11
CLN3-202ENST00000355477 SLC6A1P30531 599 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 MXD1Q05195 221 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 ARFRP1Q13795 201 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 KIR2DS1Q14954 304 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 DEFB136Q30KP8 78 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 CDNFQ49AH0 187 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 KCTD21Q4G0X4 260 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 ZNF383Q8NA42 475 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 PARP11Q9NR21 331 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 KIAA1456Q9P272 454 aa14.37□□□□□ -0.11
CLN3-202ENST00000355477 IGKV1-16P04430 117 aa14.36□□□□□ -0.11
CLN3-202ENST00000355477 GSTP1P09211 210 aaKnown RBP14.36□□□□□ -0.11
CLN3-202ENST00000355477 OR8U9P0C7N5 309 aa14.36□□□□□ -0.11
CLN3-202ENST00000355477 MYCNOSP40205 109 aa14.36□□□□□ -0.11
CLN3-202ENST00000355477 CDX1P47902 265 aaPredicted RBP14.36□□□□□ -0.11
CLN3-202ENST00000355477 SERPINB10P48595 397 aa14.36□□□□□ -0.11
CLN3-202ENST00000355477 NDPQ00604 133 aa14.36□□□□□ -0.11
CLN3-202ENST00000355477 SFXN4Q6P4A7 337 aa14.36□□□□□ -0.11
CLN3-202ENST00000355477 REC114Q7Z4M0 266 aa14.36□□□□□ -0.11
CLN3-202ENST00000355477 OR8U1Q8NH10 309 aa14.36□□□□□ -0.11
CLN3-202ENST00000355477 OR10J5Q8NHC4 309 aa14.36□□□□□ -0.11
CLN3-202ENST00000355477 KLK15Q9H2R5 256 aa14.36□□□□□ -0.11
CLN3-202ENST00000355477 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.36□□□□□ -0.11
CLN3-202ENST00000355477 FBXO7Q9Y3I1 522 aa14.36□□□□□ -0.11
CLN3-202ENST00000355477 LOC100506127A0A0U1RQW1 187 aa14.35□□□□□ -0.11
CLN3-202ENST00000355477 CCL24O00175 119 aa14.35□□□□□ -0.11
CLN3-202ENST00000355477 RBBP9O75884 186 aa14.35□□□□□ -0.11
CLN3-202ENST00000355477 TFAP2AP05549 437 aa14.35□□□□□ -0.11
CLN3-202ENST00000355477 CD36P16671 472 aa14.35□□□□□ -0.11
CLN3-202ENST00000355477 TALDO1P37837 337 aa14.35□□□□□ -0.11
CLN3-202ENST00000355477 KRTAP10-11P60412 298 aa14.35□□□□□ -0.11
CLN3-202ENST00000355477 KIAA0141Q14154 515 aaPredicted RBP14.35□□□□□ -0.11
CLN3-202ENST00000355477 Q6ZS49 121 aa14.35□□□□□ -0.11
CLN3-202ENST00000355477 LGALS14Q8TCE9 139 aa14.35□□□□□ -0.11
CLN3-202ENST00000355477 C5orf30Q96GV9 206 aa14.35□□□□□ -0.11
CLN3-202ENST00000355477 CENPOQ9BU64 300 aa14.35□□□□□ -0.11
CLN3-202ENST00000355477 TNCP24821 2201 aa14.34□□□□□ -0.11
CLN3-202ENST00000355477 TRAV41A0A0B4J266 112 aa14.34□□□□□ -0.11
CLN3-202ENST00000355477 M0R1X1 148 aa14.34□□□□□ -0.11
CLN3-202ENST00000355477 DIRAS3O95661 229 aa14.34□□□□□ -0.11
CLN3-202ENST00000355477 IGLV1-40P01703 118 aa14.34□□□□□ -0.11
CLN3-202ENST00000355477 OR5H8P0DN80 308 aa14.34□□□□□ -0.11
CLN3-202ENST00000355477 EGR2P11161 476 aaPredicted RBP14.34□□□□□ -0.11
CLN3-202ENST00000355477 CX3CL1P78423 397 aa14.34□□□□□ -0.11
CLN3-202ENST00000355477 PSG5Q15238 335 aa14.34□□□□□ -0.11
CLN3-202ENST00000355477 SRSF7Q16629 238 aaKnown RBP eCLIP14.34□□□□□ -0.11
CLN3-202ENST00000355477 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.34□□□□□ -0.11
CLN3-202ENST00000355477 MYOZ3Q8TDC0 251 aa14.34□□□□□ -0.11
CLN3-202ENST00000355477 RNF5Q99942 180 aa14.34□□□□□ -0.11
CLN3-202ENST00000355477 OR2D2Q9H210 308 aa14.34□□□□□ -0.11
CLN3-202ENST00000355477 SDHAF2Q9NX18 166 aa14.34□□□□□ -0.11
CLN3-202ENST00000355477 GAB2Q9UQC2 676 aa14.34□□□□□ -0.11
CLN3-202ENST00000355477 DUS4LO95620 317 aaKnown RBP14.33□□□□□ -0.12
CLN3-202ENST00000355477 HOXD3P31249 432 aaPredicted RBP14.33□□□□□ -0.12
CLN3-202ENST00000355477 PLGLAQ15195 96 aa14.33□□□□□ -0.12
CLN3-202ENST00000355477 C19orf54Q5BKX5 351 aa14.33□□□□□ -0.12
CLN3-202ENST00000355477 HACD4Q5VWC8 232 aa14.33□□□□□ -0.12
CLN3-202ENST00000355477 ZNF660Q6AZW8 331 aaPredicted RBP14.33□□□□□ -0.12
CLN3-202ENST00000355477 H1FOOQ8IZA3 346 aaPredicted RBP14.33□□□□□ -0.12
CLN3-202ENST00000355477 MINDY2Q8NBR6 621 aa14.33□□□□□ -0.12
CLN3-202ENST00000355477 OR5H6Q8NGV6 325 aa14.33□□□□□ -0.12
CLN3-202ENST00000355477 MRAPQ8TCY5 172 aa14.33□□□□□ -0.12
CLN3-202ENST00000355477 CLCC1Q96S66 551 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms