RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 WDR61Q9GZS3 305 aaKnown RBP18.21■□□□□ 0.51
SHMT1-202ENST00000352886 GNG13Q9P2W3 67 aa18.21■□□□□ 0.51
SHMT1-202ENST00000352886 DEFB108AA8MXU0 73 aa18.21■□□□□ 0.51
SHMT1-202ENST00000352886 CEACAM4O75871 244 aa18.21■□□□□ 0.51
SHMT1-202ENST00000352886 P0C879 139 aa18.21■□□□□ 0.51
SHMT1-202ENST00000352886 RPS23P62266 143 aaKnown RBP18.21■□□□□ 0.51
SHMT1-202ENST00000352886 SLC38A11Q08AI6 406 aa18.21■□□□□ 0.51
SHMT1-202ENST00000352886 KHDC3LQ587J8 217 aa18.21■□□□□ 0.51
SHMT1-202ENST00000352886 ZADH2Q8N4Q0 377 aa18.21■□□□□ 0.51
SHMT1-202ENST00000352886 SLC25A15Q9Y619 301 aa18.21■□□□□ 0.51
SHMT1-202ENST00000352886 UBE2L5PA0A1B0GUS4 154 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 OR8U8P0C7N1 319 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 EDDM3AQ14507 147 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 ZNF726P1Q15940 193 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 LCN15Q6UWW0 184 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 TMEM14EPQ6UXP3 125 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 BEND4Q6ZU67 534 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 ZNF429Q86V71 674 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 RAB39BQ96DA2 213 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 DCTN5Q9BTE1 182 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 DUSP13Q9UII6 198 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 MBD3L4A6NDZ8 208 aaPredicted RBP18.2■□□□□ 0.5
SHMT1-202ENST00000352886 MBD3L3A6NE82 208 aaPredicted RBP18.2■□□□□ 0.5
SHMT1-202ENST00000352886 MBD3L5A6NJ08 208 aaPredicted RBP18.2■□□□□ 0.5
SHMT1-202ENST00000352886 LRRC30A6NM36 301 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 ZNF891A8MT65 544 aaPredicted RBP18.2■□□□□ 0.5
SHMT1-202ENST00000352886 ZNF787Q6DD87 383 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 ZNF561Q8N587 486 aa18.2■□□□□ 0.5
SHMT1-202ENST00000352886 MBD3L2Q8NHZ7 208 aaPredicted RBP18.2■□□□□ 0.5
SHMT1-202ENST00000352886 LOC102723971A0A1B0GUV8 181 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 OR2C1O95371 312 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 AGAP20933 346 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 LINC00205P59089 165 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 SNRPEP62304 92 aaKnown RBP18.19■□□□□ 0.5
SHMT1-202ENST00000352886 SERF2P84101 59 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 MSMPQ1L6U9 139 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 SSX7Q7RTT5 188 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 CLN8Q9UBY8 286 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 ZNF318Q5VUA4 2279 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 A0A1B0GWJ7 208 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 ST8SIA5O15466 376 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 EGR1P18146 543 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 PRDX2P32119 198 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 LTC4SQ16873 150 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 IGF2-ASQ6U949 168 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 LRP11Q86VZ4 500 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 C1orf174Q8IYL3 243 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 RCC1LQ96I51 464 aaKnown RBP18.19■□□□□ 0.5
SHMT1-202ENST00000352886 ZNF665Q9H7R5 613 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 CTNNBIP1Q9NSA3 81 aaPredicted RBP18.19■□□□□ 0.5
SHMT1-202ENST00000352886 PSG11Q9UQ72 335 aa18.19■□□□□ 0.5
SHMT1-202ENST00000352886 ZFP92A6NM28 416 aa18.18■□□□□ 0.5
SHMT1-202ENST00000352886 LINC00473A8K010 186 aa18.18■□□□□ 0.5
SHMT1-202ENST00000352886 ZNF83P51522 516 aa18.18■□□□□ 0.5
SHMT1-202ENST00000352886 FGF8P55075 233 aaPredicted RBP18.18■□□□□ 0.5
SHMT1-202ENST00000352886 MZT1Q08AG7 82 aa18.18■□□□□ 0.5
SHMT1-202ENST00000352886 Q3ZCU0 254 aa18.18■□□□□ 0.5
SHMT1-202ENST00000352886 ADAM5Q6NVV9 412 aa18.18■□□□□ 0.5
SHMT1-202ENST00000352886 FAM180AQ6UWF9 173 aa18.18■□□□□ 0.5
SHMT1-202ENST00000352886 TAF15Q92804 592 aaKnown RBP eCLIP18.18■□□□□ 0.5
SHMT1-202ENST00000352886 PARD6GQ9BYG4 376 aaPredicted RBP18.18■□□□□ 0.5
SHMT1-202ENST00000352886 TRAV20A0A0B4J274 112 aa18.18■□□□□ 0.5
SHMT1-202ENST00000352886 ATXN7O15265 892 aaPredicted RBP18.18■□□□□ 0.5
SHMT1-202ENST00000352886 SPINT2O43291 252 aa18.18■□□□□ 0.5
SHMT1-202ENST00000352886 TAGLN2P37802 199 aaKnown RBP18.18■□□□□ 0.5
SHMT1-202ENST00000352886 ELLP55199 621 aaPredicted RBP18.18■□□□□ 0.5
SHMT1-202ENST00000352886 ZNF600Q6ZNG1 722 aa18.18■□□□□ 0.5
SHMT1-202ENST00000352886 NANPQ8TBE9 248 aa18.18■□□□□ 0.5
SHMT1-202ENST00000352886 MBD3L1Q8WWY6 194 aa18.18■□□□□ 0.5
SHMT1-202ENST00000352886 NIPSNAP3BQ9BS92 247 aa18.18■□□□□ 0.5
SHMT1-202ENST00000352886 CADP27708 2225 aa18.17■□□□□ 0.5
SHMT1-202ENST00000352886 C15orf65H3BRN8 121 aa18.17■□□□□ 0.5
SHMT1-202ENST00000352886 EIF3GO75821 320 aaKnown RBP eCLIP18.17■□□□□ 0.5
SHMT1-202ENST00000352886 DLK1P80370 383 aa18.17■□□□□ 0.5
SHMT1-202ENST00000352886 FAM169BQ8N8A8 192 aa18.17■□□□□ 0.5
SHMT1-202ENST00000352886 AGMATQ9BSE5 352 aa18.17■□□□□ 0.5
SHMT1-202ENST00000352886 NBEAQ8NFP9 2946 aa18.17■□□□□ 0.5
SHMT1-202ENST00000352886 ZNF737O75373 536 aa18.17■□□□□ 0.5
SHMT1-202ENST00000352886 CLDN14O95500 239 aa18.17■□□□□ 0.5
SHMT1-202ENST00000352886 IFNA4P05014 189 aa18.17■□□□□ 0.5
SHMT1-202ENST00000352886 CD55P08174 381 aa18.17■□□□□ 0.5
SHMT1-202ENST00000352886 HNF4GQ14541 408 aa18.17■□□□□ 0.5
SHMT1-202ENST00000352886 TMEM41BQ5BJD5 291 aa18.17■□□□□ 0.5
SHMT1-202ENST00000352886 IGKV1D-17A0A075B6S4 117 aa18.16■□□□□ 0.5
SHMT1-202ENST00000352886 ZNF727A8MUV8 499 aa18.16■□□□□ 0.5
SHMT1-202ENST00000352886 S100A6P06703 90 aa18.16■□□□□ 0.5
SHMT1-202ENST00000352886 FABP1P07148 127 aa18.16■□□□□ 0.5
SHMT1-202ENST00000352886 EIF2S3LQ2VIR3 472 aaKnown RBP18.16■□□□□ 0.5
SHMT1-202ENST00000352886 ZNF66Q6ZN08 573 aa18.16■□□□□ 0.5
SHMT1-202ENST00000352886 H2BFWTQ7Z2G1 175 aa18.16■□□□□ 0.5
SHMT1-202ENST00000352886 ZDHHC16Q969W1 377 aa18.16■□□□□ 0.5
SHMT1-202ENST00000352886 SRRM5B3KS81 715 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 M0R1B8 84 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 ZG16O60844 167 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 BCL2P10415 239 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 HTD2P86397 168 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 TRAT1Q6PIZ9 186 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 TCTEX1D1Q8N7M0 179 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 S100PBPQ96BU1 408 aa18.15■□□□□ 0.5
SHMT1-202ENST00000352886 TVP23CQ96ET8 276 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms