RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.25□□□□□ -1.73
CSMD3-201ENST00000297405 ACSM6Q6P461 480 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 HIST1H2BHQ93079 126 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 HIST1H2BNQ99877 126 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 HIST1H2BMQ99879 126 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 CXorf36Q9H7Y0 433 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 TM4SF1P30408 202 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 DUTP33316 252 aaKnown RBP4.25□□□□□ -1.73
CSMD3-201ENST00000297405 NUBP1P53384 320 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 SPANXN1Q5VSR9 72 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 CLEC4CQ8WTT0 213 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 CXCL16Q9H2A7 254 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 DHCR7Q9UBM7 475 aaKnown RBP4.25□□□□□ -1.73
CSMD3-201ENST00000297405 SIGLEC1Q9BZZ2 1709 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 KLRC4-KLRK1H3BQV0 150 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 SPINK8P0C7L1 97 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 PAX2Q02962 417 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 C19orf54Q5BKX5 351 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 CIARTQ8N365 385 aaPredicted RBP4.25□□□□□ -1.73
CSMD3-201ENST00000297405 OR1L8Q8NGR8 309 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 TMEM222Q9H0R3 208 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 FEZF1A0PJY2 475 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 M0QZQ0 153 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 PSG2P11465 335 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 IRF3Q14653 427 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 C1orf185Q5T7R7 199 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 METRNLQ641Q3 311 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 NKAIN4Q8IVV8 208 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 SIGLEC7Q9Y286 467 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 PHLDA3Q9Y5J5 127 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 TMEM272A0A1B0GTI8 110 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 EDDM3BP56851 147 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 ZNF121P58317 390 aaPredicted RBP4.25□□□□□ -1.73
CSMD3-201ENST00000297405 CD300EQ496F6 205 aaPredicted RBP4.25□□□□□ -1.73
CSMD3-201ENST00000297405 LHX8Q68G74 356 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 ZNF774Q6NX45 483 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 RFLNAQ6ZTI6 216 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 MORN4Q8NDC4 146 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 OR52E1Q8NGJ3 308 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 LRRC61Q9BV99 259 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 CGGBP1Q9UFW8 167 aaPredicted RBP4.25□□□□□ -1.73
CSMD3-201ENST00000297405 ID1P41134 155 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 ZNF146Q15072 292 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 CDKN3Q16667 212 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 HEPN1Q6WQI6 88 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 DTX1Q86Y01 620 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 FMC1Q96HJ9 113 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 MRPL27Q9P0M9 148 aaKnown RBP4.25□□□□□ -1.73
CSMD3-201ENST00000297405 CD5LO43866 347 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 GPR6P46095 362 aaPredicted RBP4.25□□□□□ -1.73
CSMD3-201ENST00000297405 RPL18Q07020 188 aaKnown RBP4.25□□□□□ -1.73
CSMD3-201ENST00000297405 KIR3DL3Q8N743 410 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 RNF181Q9P0P0 153 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 hADV38S2A0JD32 116 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 GAGE12JA6NER3 117 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 GAGE7O76087 117 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 GAGE12FP0CL80 117 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 GAGE12GP0CL81 117 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 GAGE12IP0CL82 117 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 TNFAIP6P98066 277 aaPredicted RBP4.24□□□□□ -1.73
CSMD3-201ENST00000297405 EFNB1P98172 346 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 GAGE4Q13068 117 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 CCDC144NLQ6NUI1 221 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 PPDPFLQ8WWR9 84 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 A0A1B0GTI1 187 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 HSPB6O14558 160 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 OPRM1P35372 400 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 LIMS2Q7Z4I7 341 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 SPEM1Q8N4L4 309 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 OR4D5Q8NGN0 318 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 SIGLEC11Q96RL6 698 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 J3KRW8 73 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 GATAD1Q8WUU5 269 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 WDYHV1Q96HA8 205 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 C20orf144Q9BQM9 153 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 VN1R1Q9GZP7 353 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 GNB4Q9HAV0 340 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 TRAV8-1A0A0A6YYK1 113 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 A0A1W2PS18 150 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 DPM2O94777 84 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 TSPOP30536 169 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 SRIP30626 198 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 DMKNQ6E0U4 476 aaPredicted RBP4.24□□□□□ -1.73
CSMD3-201ENST00000297405 FAM53AQ6NSI3 398 aaPredicted RBP4.24□□□□□ -1.73
CSMD3-201ENST00000297405 RPS27LQ71UM5 84 aaKnown RBP4.24□□□□□ -1.73
CSMD3-201ENST00000297405 HOGA1Q86XE5 327 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 SLC25A40Q8TBP6 338 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 HIST1H2BLQ99880 126 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 MRPL20Q9BYC9 149 aaKnown RBP4.24□□□□□ -1.73
CSMD3-201ENST00000297405 APOBEC3BQ9UH17 382 aaKnown RBP4.24□□□□□ -1.73
CSMD3-201ENST00000297405 RGRP47804 291 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 EWSR1Q01844 656 aaKnown RBP eCLIP4.24□□□□□ -1.73
CSMD3-201ENST00000297405 CD200R1LQ6Q8B3 271 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 BTLAQ7Z6A9 289 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 TDHQ8IZJ6 230 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 ZNF519Q8TB69 540 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 TMEM186Q96B77 213 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 ARHGAP5-AS1Q96IT6 56 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 WNT5BQ9H1J7 359 aa4.24□□□□□ -1.73
CSMD3-201ENST00000297405 WSB2Q9NYS7 404 aaPredicted RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms